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LacPavin_0818_WC55_scaffold_113784_prodigal-single.1__X__X__00302
Bact-VirLacPavin_0818_WC55_scaffold_113784_prodigal-single.1__X__X__00302
Identity
- Kingdom:
- phage
Quality
77.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-68
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2iewB00 | 3.30.470.160 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Inositol polyphosphate kinase | 0.53 | 40.0 | 2.75e-01 | 82.4% | 33.2% |
| 3k8kA03 | 3.90.400.10 | Alpha Beta › Alpha-Beta Complex › Oligo-1,6-glucosidase; domain 2 › Oligo-1,6-glucosidase; Domain 2 | 0.52 | 36.0 | 3.52e-01 | 75.0% | 100.0% |
| 8begA01 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 43.0 | 3.38e-01 | 98.5% | 58.4% |
| 3to7A03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 36.0 | 3.51e-01 | 76.5% | 72.8% |
| 1af7A02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 42.0 | 3.15e-01 | 97.1% | 72.2% |
| 1g5aA03 | 3.90.400.10 | Alpha Beta › Alpha-Beta Complex › Oligo-1,6-glucosidase; domain 2 › Oligo-1,6-glucosidase; Domain 2 | 0.51 | 37.0 | 3.65e-01 | 89.7% | 75.0% |
| 1lwjA02 | 3.90.400.10 | Alpha Beta › Alpha-Beta Complex › Oligo-1,6-glucosidase; domain 2 › Oligo-1,6-glucosidase; Domain 2 | 0.50 | 36.0 | 3.72e-01 | 79.4% | 100.0% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3970297 | 101.1.2.273 ↗ | alpha arrays › HTH › HTH › winged helix domain › CxxCxxCC | 0.73 | 59.0 | 5.56e-01 | 88.2% | 95.2% |
| 3171559 | 206.1.2.3 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › IPK | 0.55 | 39.0 | 2.70e-01 | 88.2% | 19.7% |
| 5028275 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.53 | 46.0 | 2.97e-01 | 100.0% | 29.9% |
| None | — | 0.52 | 39.0 | 2.30e-01 | 83.8% | 55.5% | |
| 4094198 | 3775.1.1.1 ↗ | beta barrels › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › CD36 | 0.51 | 40.0 | 2.57e-01 | 94.1% | 82.6% |
| 4148999 | 4132.1.1.1 ↗ | alpha bundles › IpaD-like › IpaD-like › IpaD-like › T3SS_TC | 0.50 | 41.0 | 2.84e-01 | 100.0% | 76.9% |
D2
medium
residues 69-130
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7o85C01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 38.0 | 3.59e-01 | 77.4% | 66.2% |
| 4lvnP00 | 3.30.70.2380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 36.0 | 3.42e-01 | 82.3% | 59.3% |
| 1goiA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.51 | 31.0 | 2.79e-01 | 80.6% | 38.9% |
| 4ntwB00 | 4.10.410.10 | Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain | 0.51 | 33.0 | 3.38e-01 | 80.6% | 69.5% |
| 1eq6A00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.50 | 38.0 | 2.82e-01 | 85.5% | 97.4% |
| 3o46A00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.50 | 40.0 | 3.70e-01 | 95.2% | 66.7% |
| 2xcqA02 | 3.90.199.10 | Alpha Beta › Alpha-Beta Complex › Topoisomerase II; domain 5 › Topoisomerase II, domain 5 | 0.50 | 40.0 | 2.81e-01 | 100.0% | 38.4% |
| 2bm0A03 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.50 | 33.0 | 3.54e-01 | 74.2% | 82.4% |
| 2xmjA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 33.0 | 3.30e-01 | 87.1% | 66.7% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3718054 | 109.4.1.95 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2 | 0.60 | 37.0 | 2.45e-01 | 75.8% | 13.3% |
| 3406650 | 11.1.1.822 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF229 | 0.54 | 44.0 | 3.79e-01 | 93.5% | 96.2% |
| 4861745 | 305.1.1.0 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase | 0.53 | 36.0 | 3.69e-01 | 71.0% | 77.4% |
| 5076515 | 7573.1.1.0 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like | 0.52 | 40.0 | 3.04e-01 | 90.3% | 83.9% |
| 4855517 | 101.1.2.9 ↗ | alpha arrays › HTH › HTH › winged helix domain › DNA_topoisoIV | 0.52 | 37.0 | 2.64e-01 | 79.0% | 31.0% |
| 3481348 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.51 | 41.0 | 3.45e-01 | 88.7% | 51.4% |
| 3652488 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.51 | 38.0 | 2.21e-01 | 87.1% | 96.9% |
| 3915329 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 40.0 | 3.92e-01 | 91.9% | 80.0% |
| 3873624 | 304.9.1.6 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › Smg4_UPF3 | 0.50 | 36.0 | 2.94e-01 | 80.6% | 45.2% |