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LacPavin_0818_WC55_scaffold_113784_prodigal-single.1__X__X__00318
Bact-VirLacPavin_0818_WC55_scaffold_113784_prodigal-single.1__X__X__00318
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 36-152
Domain cluster:
rep: P0_An_pond3_S8_coassembly_k141_133253_prodigal-single.1__X__X__00335__D19-116
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3nqzA01 | 3.10.450.490 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.64 | 43.0 | 4.83e-01 | 95.7% | 89.0% |
| 2pwwA00 | 3.30.310.100 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › YugN-like | 0.60 | 40.0 | 4.03e-01 | 94.0% | 67.8% |
| 3djwA00 | 3.30.160.300 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.60 | 38.0 | 4.13e-01 | 95.7% | 77.9% |
| 5w3xD01 | 2.20.25.80 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain | 0.58 | 33.0 | 4.09e-01 | 90.6% | 98.5% |
| 1xxmC01 | 3.30.1450.10 | Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › | 0.57 | 35.0 | 4.07e-01 | 91.5% | 94.6% |
| 4m4pA02 | 2.60.40.1770 | Mainly Beta › Sandwich › Immunoglobulin-like › ephrin a2 ectodomain | 0.56 | 29.0 | 3.66e-01 | 75.2% | 93.2% |
| 4ehoA04 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.55 | 45.0 | 4.46e-01 | 88.9% | 83.1% |
| 2cc3A00 | 3.10.450.230 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein | 0.55 | 40.0 | 3.78e-01 | 76.1% | 87.5% |
| 3ia8A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.55 | 36.0 | 3.29e-01 | 76.9% | 48.1% |
| 1vjhA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.55 | 39.0 | 3.87e-01 | 97.4% | 70.8% |
| 3gwrB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 43.0 | 4.19e-01 | 83.8% | 96.1% |
| 7c5wA01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 39.0 | 3.69e-01 | 76.1% | 98.0% |
| 3icyA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.54 | 37.0 | 3.76e-01 | 94.0% | 70.3% |
| 2rfrA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 39.0 | 3.60e-01 | 76.1% | 77.9% |
| 1xgsA01 | 3.90.230.10 | Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily | 0.54 | 47.0 | 3.88e-01 | 97.4% | 72.5% |
| 2jq5A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 39.0 | 3.84e-01 | 77.8% | 80.5% |
| 5jqkA03 | 3.90.230.10 | Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily | 0.53 | 48.0 | 3.57e-01 | 100.0% | 80.9% |
| 2ehbD00 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.53 | 34.0 | 3.39e-01 | 90.6% | 61.1% |
| 2zbbA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 35.0 | 3.91e-01 | 96.6% | 96.3% |
| 1jkgA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 38.0 | 3.62e-01 | 76.1% | 84.9% |
| 5bkaE01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 38.0 | 3.67e-01 | 76.1% | 93.9% |
| 1rxxC01 | 3.75.10.10 | Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A | 0.51 | 41.0 | 3.03e-01 | 87.2% | 98.8% |
| 3eehA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 42.0 | 4.25e-01 | 96.6% | 90.5% |
| 3h9wA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 41.0 | 4.30e-01 | 90.6% | 94.5% |
| 3ewkA03 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.50 | 40.0 | 4.23e-01 | 87.2% | 99.1% |
| 3fc7A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.50 | 39.0 | 4.15e-01 | 93.2% | 98.0% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4180235 | 243.3.1.5 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › FTP | 0.67 | 41.0 | 4.84e-01 | 76.1% | 88.7% |
| 3966794 | 243.3.1.5 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › FTP | 0.65 | 43.0 | 4.87e-01 | 94.0% | 88.9% |
| 4384965 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.58 | 38.0 | 4.47e-01 | 90.6% | 97.5% |
| 3664186 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.58 | 42.0 | 3.89e-01 | 76.9% | 80.5% |
| 3224242 | 331.9.1.3 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › Coatomer_b_Cpla | 0.57 | 44.0 | 4.26e-01 | 100.0% | 71.9% |
| 3919290 | 243.1.1.91 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4518 | 0.57 | 41.0 | 3.93e-01 | 76.1% | 95.0% |
| 3338622 | 243.1.1.2 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 | 0.56 | 41.0 | 3.74e-01 | 77.8% | 73.8% |
| 3277868 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.55 | 40.0 | 3.88e-01 | 76.1% | 94.0% |
| 3206195 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.55 | 45.0 | 3.37e-01 | 87.2% | 38.6% |
| 3631700 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.54 | 44.0 | 4.16e-01 | 87.2% | 77.1% |
| 4335306 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.54 | 40.0 | 3.93e-01 | 77.8% | 80.0% |
| 3937269 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.54 | 37.0 | 3.20e-01 | 82.9% | 44.9% |
| 3882543 | 243.3.1.4 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Latexin_N | 0.54 | 35.0 | 3.82e-01 | 75.2% | 81.1% |
| 3687773 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.53 | 43.0 | 4.28e-01 | 87.2% | 84.8% |
| 4856776 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.53 | 44.0 | 4.22e-01 | 89.7% | 78.0% |
| 3802971 | 708.1.1.1 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM | 0.53 | 43.0 | 4.00e-01 | 94.9% | 68.7% |
| 1905936 | 283.1.1.2 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Peptidase_M24,Peptidase_M24_C | 0.53 | 48.0 | 3.56e-01 | 100.0% | 79.0% |
| 3968143 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.53 | 44.0 | 4.45e-01 | 93.2% | 88.3% |
| 4481016 | 243.1.1.6 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › VirB8 | 0.53 | 39.0 | 3.71e-01 | 77.8% | 95.0% |
| 4542091 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.52 | 43.0 | 4.23e-01 | 90.6% | 80.8% |
| 3230068 | 243.1.1.85 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26531 | 0.52 | 38.0 | 3.89e-01 | 76.1% | 95.5% |
| 3691025 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.52 | 41.0 | 3.68e-01 | 85.5% | 68.5% |
| 3950922 | 243.1.1.80 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26580 | 0.51 | 37.0 | 3.74e-01 | 76.1% | 94.2% |
| 3839234 | 5090.1.1.0 ↗ | beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains | 0.51 | 41.0 | 4.35e-01 | 90.6% | 97.1% |
| 5034549 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.51 | 37.0 | 3.68e-01 | 96.6% | 70.4% |
| 4930170 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.51 | 42.0 | 3.79e-01 | 93.2% | 63.6% |
| 3195333 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.51 | 41.0 | 3.94e-01 | 87.2% | 85.9% |
| 5034548 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.51 | 40.0 | 4.09e-01 | 90.6% | 86.1% |
| 3687000 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.51 | 41.0 | 3.18e-01 | 90.6% | 38.5% |
| 4100322 | 243.3.1.5 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › FTP | 0.51 | 37.0 | 4.00e-01 | 95.7% | 89.0% |
| 5075975 | 331.3.1.9 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 | 0.50 | 40.0 | 3.59e-01 | 86.3% | 73.5% |
| 5083330 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.50 | 41.0 | 2.59e-01 | 88.0% | 17.1% |
| 3731403 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.50 | 41.0 | 4.06e-01 | 92.3% | 83.2% |
| 4977960 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.50 | 41.0 | 2.57e-01 | 87.2% | 16.3% |
| 3353938 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 44.0 | 3.93e-01 | 97.4% | 98.8% |