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LacPavin_0818_WC55_scaffold_2946_prodigal-single.1__X__X__00003
Bact-VirLacPavin_0818_WC55_scaffold_2946_prodigal-single.1__X__X__00003
Identity
- Kingdom:
- phage
Quality
86.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 616-774
Domain cluster:
rep: NC_006883.2__YP_214524.1__PSSM2_293__00293__D387-529
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1e7uA02 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.53 | 38.0 | 4.01e-01 | 74.2% | 100.0% |
| 4n6qA00 | 2.60.40.3960 | Mainly Beta › Sandwich › Immunoglobulin-like › Velvet domain | 0.52 | 38.0 | 3.70e-01 | 76.1% | 74.7% |
| 2y3aA02 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.51 | 37.0 | 3.91e-01 | 74.2% | 100.0% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3699859 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.56 | 42.0 | 4.24e-01 | 76.7% | 99.4% |
| 5035497 | 304.51.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related | 0.56 | 30.0 | 3.93e-01 | 94.3% | 100.0% |
| 3930525 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.50 | 42.0 | 4.38e-01 | 95.6% | 97.2% |
D2
medium
residues 152-236
Domain cluster:
representative
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3281177 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.54 | 35.0 | 2.73e-01 | 83.5% | 30.8% |
| 4006576 | 3598.1.1.4 ↗ | a/b three-layered sandwiches › Cellulose Synthase Subunit B a/b domain › Cellulose Synthase Subunit B a/b domain › Cellulose Synthase Subunit B a/b domain › PF29164 | 0.53 | 38.0 | 3.21e-01 | 76.5% | 81.4% |
| 3692250 | 7579.1.1.18 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_2 | 0.51 | 35.0 | 2.54e-01 | 71.8% | 33.3% |
D3
medium
residues 335-513
Domain cluster:
rep: NC_006883.2__YP_214524.1__PSSM2_293__00293__D60-268