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LacPavin_0818_WC55_scaffold_2946_prodigal-single.1__X__X__00006
Bact-VirLacPavin_0818_WC55_scaffold_2946_prodigal-single.1__X__X__00006
Identity
- Kingdom:
- phage
Quality
87.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-50
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3witA00 | 2.20.220.20 | Mainly Beta › Single Sheet › Glycosyl hydrolase fold › | 0.80 | 59.0 | 5.33e-01 | 100.0% | 57.8% |
| 1wthA02 | 3.10.450.190 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.75 | 63.0 | 4.83e-01 | 100.0% | 42.2% |
| 3dueA00 | 3.40.1420.30 | Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › | 0.62 | 48.0 | 3.72e-01 | 100.0% | 51.2% |
| 4g59B00 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.61 | 51.0 | 3.58e-01 | 100.0% | 71.8% |
| 3uueA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.60 | 46.0 | 2.86e-01 | 84.4% | 15.1% |
| 4dapA02 | 3.40.1350.60 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.60 | 44.0 | 3.22e-01 | 86.7% | 45.4% |
| 4dq2A03 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 45.0 | 4.54e-01 | 97.8% | 85.1% |
| 2heqA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.59 | 40.0 | 3.90e-01 | 75.6% | 85.2% |
| 6vilA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.58 | 47.0 | 3.36e-01 | 95.6% | 68.3% |
| 4lpqA02 | 2.40.440.10 | Mainly Beta › Beta Barrel › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like | 0.57 | 42.0 | 3.20e-01 | 86.7% | 54.3% |
| 1b44D00 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.57 | 38.0 | 3.08e-01 | 73.3% | 84.0% |
| 3oymA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 42.0 | 3.79e-01 | 86.7% | 70.0% |
| 2vldA02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.57 | 45.0 | 3.45e-01 | 84.4% | 55.0% |
| 2nvnA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.56 | 48.0 | 3.61e-01 | 100.0% | 80.8% |
| 4ft4B01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.56 | 46.0 | 3.27e-01 | 95.6% | 75.3% |
| 2v1rA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.56 | 38.0 | 3.57e-01 | 80.0% | 82.1% |
| 1ycyA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 42.0 | 3.93e-01 | 93.3% | 77.4% |
| 1zkpC00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.53 | 43.0 | 2.79e-01 | 100.0% | 22.4% |
| 1s68A02 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.51 | 43.0 | 3.32e-01 | 100.0% | 77.0% |
| 3lzhA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 38.0 | 3.07e-01 | 80.0% | 75.8% |
| 4fr4D01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 41.0 | 3.07e-01 | 95.6% | 82.9% |
| 4gp3A03 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.51 | 35.0 | 2.68e-01 | 75.6% | 58.2% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3386276 | 809.2.1.1 ↗ | a+b two layers › BLIP-like › BT0923-like › BT0923-like › PepSY_like | 0.68 | 48.0 | 4.48e-01 | 73.3% | 81.8% |
| 5078966 | 247.1.1.11 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 | 0.57 | 49.0 | 3.08e-01 | 100.0% | 51.0% |
| 3616769 | 4.1.1.287 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF5641 | 0.57 | 44.0 | 3.61e-01 | 93.3% | 54.7% |
| 4964631 | 247.1.1.11 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 | 0.57 | 43.0 | 2.77e-01 | 88.9% | 27.8% |
| 3744448 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.56 | 48.0 | 2.96e-01 | 100.0% | 33.6% |
| 5041686 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.56 | 47.0 | 3.30e-01 | 95.6% | 73.1% |
| 5032478 | 247.1.1.0 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase | 0.56 | 47.0 | 3.16e-01 | 100.0% | 48.4% |
| 5034740 | 247.1.1.11 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 | 0.55 | 41.0 | 2.66e-01 | 88.9% | 30.6% |
| 3621211 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 37.0 | 3.89e-01 | 71.1% | 80.0% |
| 3599386 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.55 | 41.0 | 2.51e-01 | 82.2% | 13.2% |
| 7906 | 247.1.1.11 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 | 0.53 | 44.0 | 2.82e-01 | 100.0% | 22.5% |
| 5045231 | 247.1.1.11 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 | 0.53 | 44.0 | 2.97e-01 | 100.0% | 82.5% |
| 5002040 | 247.1.1.28 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › RMMBL | 0.53 | 43.0 | 2.72e-01 | 95.6% | 32.3% |
| 5018058 | 247.1.1.11 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 | 0.52 | 44.0 | 2.80e-01 | 100.0% | 23.6% |
| 68497 | 809.2.1.1 ↗ | a+b two layers › BLIP-like › BT0923-like › BT0923-like › PepSY_like | 0.51 | 45.0 | 4.24e-01 | 100.0% | 80.4% |
| 5027195 | 247.1.1.12 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_3 | 0.51 | 43.0 | 2.73e-01 | 100.0% | 31.6% |
| 5022790 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.51 | 41.0 | 2.67e-01 | 100.0% | 41.7% |
| 3975292 | 7515.1.1.2 ↗ | a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase | 0.50 | 43.0 | 2.57e-01 | 100.0% | 67.5% |