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LacPavin_0818_WC55_scaffold_2946_prodigal-single.1__X__X__00078
Bact-VirLacPavin_0818_WC55_scaffold_2946_prodigal-single.1__X__X__00078
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-84
Domain cluster:
rep: NC_031927.1__YP_009323018.1__BOW86_gp085__00085__D3-79
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01541.31 best | GIY-YIG | 42.0 | 1.30e-10 | 98.8% | 89.7% |
D2
high
residues 138-222
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ly1A01 | 3.30.420.610 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like | 0.68 | 44.0 | 4.61e-01 | 78.8% | 70.9% |
| 2co5A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 48.0 | 4.67e-01 | 77.6% | 67.4% |
| 3a1yA00 | 1.10.10.1410 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.67 | 41.0 | 4.76e-01 | 70.6% | 89.7% |
| 2mh2A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 44.0 | 4.88e-01 | 77.6% | 93.8% |
| 2doeA00 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.58 | 36.0 | 3.64e-01 | 71.8% | 62.7% |
| 1x4oA00 | 1.10.10.790 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module | 0.55 | 35.0 | 3.65e-01 | 71.8% | 70.5% |
| 1xszA02 | 1.10.1000.11 | Mainly Alpha › Orthogonal Bundle › Arf Nucleotide-binding Site Opener; domain 2 › Arf Nucleotide-binding Site Opener,domain 2 | 0.53 | 37.0 | 3.41e-01 | 72.9% | 96.5% |
| 1hjrA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.53 | 39.0 | 3.28e-01 | 81.2% | 72.8% |
| 1wz2A04 | 3.30.2320.20 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › Class I aminoacyl-tRNA synthetases (RS) | 0.53 | 38.0 | 3.83e-01 | 84.7% | 75.0% |
| 6kxdA01 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.52 | 42.0 | 3.08e-01 | 91.8% | 79.6% |
| 7cpxA01 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.52 | 45.0 | 2.91e-01 | 100.0% | 60.7% |
| 1tqyB01 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.51 | 40.0 | 2.86e-01 | 84.7% | 40.9% |
| 2esbA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.50 | 35.0 | 2.92e-01 | 74.1% | 77.8% |
| 5ce6A01 | 3.40.350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain | 0.50 | 40.0 | 3.34e-01 | 90.6% | 88.4% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3973557 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.75 | 54.0 | 4.93e-01 | 76.5% | 58.2% |
| 2807554 | 101.1.1.27 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DsrC | 0.74 | 53.0 | 4.98e-01 | 77.6% | 62.1% |
| 4994794 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.73 | 48.0 | 5.08e-01 | 77.6% | 76.0% |
| 3942167 | 101.1.2.244 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_21 | 0.72 | 44.0 | 5.05e-01 | 77.6% | 86.7% |
| 4555675 | 101.1.1.27 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DsrC | 0.68 | 49.0 | 4.58e-01 | 77.6% | 59.6% |
| 5023957 | 101.1.2.280 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_12 | 0.68 | 48.0 | 4.96e-01 | 77.6% | 78.8% |
| 3242475 | 101.1.2.137 ↗ | alpha arrays › HTH › HTH › winged helix domain › OST-HTH | 0.67 | 49.0 | 4.84e-01 | 78.8% | 73.3% |
| 4026717 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 47.0 | 5.03e-01 | 77.6% | 88.6% |
| 4953119 | 101.1.2.805 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF26350 | 0.66 | 49.0 | 3.76e-01 | 76.5% | 89.4% |
| 3973616 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 40.0 | 4.49e-01 | 75.3% | 83.3% |
| 4031678 | 101.1.2.20 ↗ | alpha arrays › HTH › HTH › winged helix domain › Arg_repressor | 0.65 | 43.0 | 4.84e-01 | 78.8% | 89.2% |
| 5005490 | 101.1.1.27 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DsrC | 0.65 | 46.0 | 4.21e-01 | 76.5% | 55.7% |
| 5057164 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 45.0 | 4.30e-01 | 78.8% | 62.0% |
| 4596907 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.64 | 40.0 | 4.32e-01 | 76.5% | 75.7% |
| 5056734 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 44.0 | 4.05e-01 | 77.6% | 53.9% |
| 3890162 | 101.1.2.526 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF27602 | 0.63 | 42.0 | 4.49e-01 | 88.2% | 78.7% |
| 3889516 | 101.1.2.206 ↗ | alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH | 0.63 | 46.0 | 4.33e-01 | 89.4% | 62.9% |
| 5025666 | 7000.1.1.4 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › PF27234 | 0.59 | 40.0 | 3.28e-01 | 70.6% | 40.6% |
| 3621586 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 37.0 | 4.50e-01 | 77.6% | 100.0% |
| 3428929 | 101.1.1.138 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › GeBP-like_DBD | 0.57 | 39.0 | 3.78e-01 | 71.8% | 83.0% |
| 4980804 | 148.1.1.4 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF | 0.57 | 42.0 | 3.48e-01 | 77.6% | 45.2% |
| 5049776 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.57 | 47.0 | 3.32e-01 | 92.9% | 76.1% |
| 4941477 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 41.0 | 3.93e-01 | 80.0% | 65.0% |
| 4998818 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.55 | 40.0 | 2.73e-01 | 77.6% | 21.8% |
| 3234078 | 101.1.7.2 ↗ | alpha arrays › HTH › HTH › Methylated DNA-protein cysteine methyltransferase-C › SPK | 0.54 | 42.0 | 3.84e-01 | 84.7% | 95.7% |
| 3893078 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.54 | 42.0 | 3.17e-01 | 84.7% | 88.4% |
| 3239312 | 101.1.1.264 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › SPK | 0.54 | 41.0 | 3.88e-01 | 84.7% | 100.0% |
| 4947841 | 314.1.1.12 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat | 0.53 | 39.0 | 2.82e-01 | 77.6% | 86.8% |
| 3242924 | 101.1.1.264 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › SPK | 0.52 | 40.0 | 3.75e-01 | 84.7% | 100.0% |
| 3597185 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.52 | 35.0 | 3.52e-01 | 70.6% | 77.3% |
| 4677683 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.51 | 39.0 | 2.97e-01 | 81.2% | 86.0% |
| 4033304 | 314.1.1.12 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat | 0.51 | 37.0 | 2.68e-01 | 77.6% | 85.1% |
| 5045083 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.51 | 35.0 | 2.72e-01 | 70.6% | 34.7% |
| 4994575 | 164.1.1.0 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II | 0.51 | 37.0 | 3.70e-01 | 78.8% | 74.4% |
| 3249845 | 7581.1.1.2 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › ketoacyl-synt | 0.50 | 38.0 | 2.69e-01 | 81.2% | 63.6% |