Back to structures

LacPavin_0818_WC55_scaffold_2946_prodigal-single.1__X__X__00165

Bact-Vir

LacPavin_0818_WC55_scaffold_2946_prodigal-single.1__X__X__00165

Identity

Kingdom:
phage

Quality

67.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-67
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2f2hA01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.78 49.0 3.14e-01 89.7% 15.1%
1iwmA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.68 54.0 3.80e-01 100.0% 28.2%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.68 41.0 3.81e-01 77.6% 47.2%
3lxqA01 3.30.1120.80 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.68 48.0 4.00e-01 91.4% 43.4%
3vn5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.66 40.0 3.83e-01 79.3% 49.3%
3e9mB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.66 45.0 3.05e-01 70.7% 66.7%
4c5wA01 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.66 51.0 4.42e-01 87.9% 94.8%
2bvbA00 2.60.120.710 Mainly Beta › Sandwich › Jelly Rolls › Toxoplasma gondii micronemal protein 1 TgMIC1 0.65 55.0 4.22e-01 96.6% 80.3%
3teeA02 2.30.30.760 Mainly Beta › Roll › SH3 type barrels. › 0.65 52.0 4.90e-01 91.4% 78.1%
2v43A01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.64 51.0 3.56e-01 100.0% 27.3%
3rp7A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.64 45.0 3.22e-01 74.1% 39.9%
1w2tA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.63 53.0 4.11e-01 96.6% 76.9%
4bjzA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 42.0 3.09e-01 72.4% 56.0%
7x7zA01 2.40.480.10 Mainly Beta › Beta Barrel › AOC barrel-like › Allene oxide cyclase-like 0.61 54.0 4.07e-01 100.0% 77.7%
2pm6D01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 52.0 3.41e-01 100.0% 41.1%
4p79A00 1.20.140.150 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.61 37.0 2.62e-01 84.5% 18.8%
4n9jA02 3.30.1120.130 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.60 46.0 3.79e-01 100.0% 44.9%
3wucB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 49.0 3.88e-01 96.6% 78.8%
2jxbA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 46.0 4.10e-01 84.5% 64.0%
2v1rA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 45.0 4.39e-01 84.5% 89.6%
1hlcA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 48.0 3.90e-01 96.6% 81.4%
8b55A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 49.0 3.51e-01 93.1% 58.1%
4v1ap00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.58 40.0 3.41e-01 72.4% 89.7%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 44.0 3.93e-01 86.2% 77.0%
4w8oB00 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.57 44.0 2.73e-01 87.9% 99.0%
4guzA01 3.30.2140.10 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › Arylamine N-acetyltransferase 0.56 49.0 3.49e-01 100.0% 65.2%
1w4tA01 3.30.2140.10 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › Arylamine N-acetyltransferase 0.56 48.0 3.45e-01 98.3% 67.4%
7bsbI01 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.56 45.0 3.51e-01 89.7% 97.6%
3ni2A01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.55 42.0 2.60e-01 87.9% 99.1%
3ed4A02 3.30.1120.10 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.55 43.0 3.82e-01 93.1% 59.0%
1q57G01 2.20.25.180 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.55 43.0 4.07e-01 87.9% 76.7%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 45.0 4.23e-01 98.3% 79.5%
4rlqA03 2.30.38.10 Mainly Beta › Roll › Luciferase; domain 3 › Luciferase; Domain 3 0.54 37.0 3.13e-01 74.1% 87.5%
2z4hA01 2.40.128.300 Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain 0.54 44.0 4.08e-01 100.0% 69.6%
1xezA04 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.54 45.0 3.52e-01 96.6% 93.3%
1j4sA00 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.54 44.0 3.39e-01 96.6% 91.9%
3pnnA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.53 43.0 2.79e-01 96.6% 17.9%
3cxbA01 3.30.2440.10 Alpha Beta › 2-Layer Sandwich › Secreted effector protein SifA fold › Secreted effector protein SifA 0.53 42.0 3.42e-01 93.1% 44.3%
4nehA01 2.130.10.130 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal 0.53 44.0 2.78e-01 100.0% 36.4%
3deeA02 3.90.930.50 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.53 39.0 3.18e-01 81.0% 89.5%
2pt7C01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.53 38.0 3.17e-01 93.1% 42.5%
7pthC01 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.52 46.0 2.74e-01 100.0% 79.9%
4bt2A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.52 44.0 3.58e-01 96.6% 57.0%
2v5oA05 2.70.130.10 Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain 0.52 41.0 3.31e-01 96.6% 94.3%
3dtyB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.52 43.0 2.99e-01 89.7% 64.3%
1mdbA03 2.30.38.10 Mainly Beta › Roll › Luciferase; domain 3 › Luciferase; Domain 3 0.52 35.0 3.33e-01 74.1% 82.9%
4nswA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 42.0 3.61e-01 100.0% 76.1%
2bwnB01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 37.0 2.73e-01 79.3% 62.9%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4679871 331.1.1.6 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 0.72 42.0 3.78e-01 77.6% 41.2%
3503630 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 46.0 3.74e-01 70.7% 83.5%
1837476 331.1.1.6 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 0.68 41.0 3.91e-01 77.6% 50.7%
4347651 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.68 53.0 3.69e-01 100.0% 26.5%
3930946 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.67 52.0 4.36e-01 84.5% 65.0%
4110683 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.66 51.0 3.58e-01 100.0% 26.5%
4188272 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.66 50.0 3.67e-01 100.0% 30.2%
1146605 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.65 51.0 3.62e-01 100.0% 28.1%
3175310 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 52.0 3.64e-01 89.7% 37.9%
4238582 3174.2.1.1 beta barrels › Ribosomal protein L14-like › Barrel domain in flagellar protein FlgA › Barrel domain in flagellar protein FlgA › ChapFlgA 0.64 52.0 5.21e-01 91.4% 95.0%
3914794 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.64 51.0 3.56e-01 89.7% 58.5%
3703208 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.64 56.0 3.54e-01 100.0% 54.6%
3507975 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.64 56.0 3.53e-01 100.0% 31.3%
3482455 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.62 51.0 3.51e-01 93.1% 51.0%
3270324 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.61 46.0 4.82e-01 100.0% 96.0%
3394865 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.60 50.0 3.53e-01 94.8% 69.2%
4656992 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.60 50.0 3.49e-01 96.6% 76.7%
1099835 77.1.1.1 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › Lipoprotein_1 0.60 49.0 4.01e-01 89.7% 49.1%
4267419 219.1.1.6 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_2 0.60 53.0 3.46e-01 100.0% 87.6%
3554026 4.1.1.233 beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.59 47.0 4.71e-01 91.4% 91.7%
3968123 3772.1.1.1 beta sandwiches › Putative anti-sigma factor BDI_1681 N-terminal domain › Putative anti-sigma factor BDI_1681 N-terminal domain › Putative anti-sigma factor BDI_1681 N-terminal domain › FecR 0.59 47.0 3.56e-01 89.7% 79.3%
3996624 5.1.5.164 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_IFT140_1st, Beta-prop_IFT140_2nd 0.59 47.0 2.94e-01 91.4% 21.6%
4945675 4.1.1.38 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.59 46.0 3.50e-01 89.7% 38.7%
3553983 4.1.1.233 beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.59 47.0 4.69e-01 96.6% 88.3%
4226849 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.59 50.0 4.60e-01 100.0% 76.2%
3193239 5.1.4.38 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC1 0.59 47.0 2.84e-01 93.1% 32.9%
3900148 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.58 46.0 3.35e-01 89.7% 50.6%
3414063 4.1.1.233 beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.58 46.0 4.71e-01 94.8% 96.4%
3928136 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 48.0 4.81e-01 96.6% 93.3%
3248113 219.1.1.6 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_2 0.58 51.0 3.27e-01 100.0% 80.3%
3392883 5.1.4.417 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › KNTC1_N 0.58 48.0 2.99e-01 100.0% 37.9%
3705575 220.1.1.128 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SPT16 0.58 45.0 3.32e-01 87.9% 50.9%
3580178 5.1.3.135 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Kelch_KLHDC2_KLHL20_DRC7, Beta-prop_ATRN-LZTR1 0.57 47.0 2.97e-01 100.0% 41.6%
3932248 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.57 49.0 3.79e-01 100.0% 67.9%
3593624 633.23.1.23 alpha bundles › Bromodomain-like › Claudin › Claudin › Amastin 0.56 46.0 3.18e-01 89.7% 64.9%
3765561 633.23.1.1 alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin 0.56 40.0 2.68e-01 84.5% 18.7%
4949914 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.56 46.0 2.91e-01 89.7% 78.2%
3500306 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 47.0 3.27e-01 98.3% 32.6%
5061340 11.1.1.237 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG4 0.55 46.0 4.41e-01 94.8% 97.1%
4029107 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.55 48.0 3.11e-01 100.0% 82.2%
3774120 4320.1.1.1 alpha superhelices › Taf5 N-terminal domain-like › Taf5 N-terminal domain-like › Taf5 N-terminal domain-like › TFIID_NTD2 0.55 43.0 2.92e-01 86.2% 90.0%
3974914 7089.1.1.4 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › FlgI 0.54 44.0 3.56e-01 91.4% 56.5%
3823929 220.1.1.163 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7046 0.54 44.0 3.56e-01 93.1% 53.3%
3881013 76.1.1.0 beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I 0.54 47.0 3.44e-01 98.3% 98.1%
3255405 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 37.0 3.39e-01 89.7% 51.2%
4940641 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 37.0 4.09e-01 75.9% 95.6%
3411310 633.23.1.4 alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_2 0.54 43.0 2.87e-01 87.9% 61.3%
3524259 633.23.1.1 alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin 0.53 38.0 2.74e-01 84.5% 23.8%
3909218 633.23.1.1 alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin 0.53 40.0 2.78e-01 82.8% 24.5%
4544563 3561.1.1.1 a+b complex topology › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Med17 0.52 45.0 2.66e-01 100.0% 12.7%
None 0.52 44.0 2.76e-01 100.0% 16.5%
3847839 6129.1.1.0 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family 0.52 44.0 2.98e-01 100.0% 60.0%
5013525 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.50 40.0 3.35e-01 100.0% 82.4%
4989279 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.50 41.0 3.59e-01 93.1% 94.4%