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LacPavin_0818_WC55_scaffold_2946_prodigal-single.1__X__X__00172
Bact-VirLacPavin_0818_WC55_scaffold_2946_prodigal-single.1__X__X__00172
Identity
- Kingdom:
- phage
Quality
91.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-54
Domain cluster:
representative
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2kvtA00 | 3.30.730.30 | Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein | 0.79 | 63.0 | 5.71e-01 | 86.8% | 71.8% |
| 2hc5A01 | 3.30.160.170 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like | 0.68 | 50.0 | 4.02e-01 | 77.4% | 43.9% |
| 1wxrA03 | 3.30.160.280 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.66 | 51.0 | 4.60e-01 | 86.8% | 73.7% |
| 1yuaA02 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.65 | 45.0 | 4.41e-01 | 96.2% | 67.2% |
| 4wsfA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.63 | 45.0 | 3.60e-01 | 77.4% | 53.2% |
| 3fm2A00 | 3.40.1570.10 | Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains | 0.63 | 46.0 | 3.53e-01 | 81.1% | 45.9% |
| 1pzxA03 | 3.30.1180.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › | 0.62 | 48.0 | 3.71e-01 | 86.8% | 41.8% |
| 1zvfB01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.61 | 49.0 | 3.53e-01 | 92.5% | 71.3% |
| 3ly7A01 | 3.40.50.11830 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.61 | 44.0 | 3.29e-01 | 83.0% | 36.0% |
| 3cz8A02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.58 | 32.0 | 3.14e-01 | 96.2% | 45.6% |
| 4hslA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.58 | 46.0 | 3.35e-01 | 92.5% | 68.1% |
| 2rajA02 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.57 | 47.0 | 3.75e-01 | 100.0% | 92.9% |
| 4qdgA02 | 2.60.40.2090 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 48.0 | 3.68e-01 | 100.0% | 76.3% |
| 2l2mA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.57 | 42.0 | 3.99e-01 | 86.8% | 68.6% |
| 1mkeA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.57 | 40.0 | 3.04e-01 | 75.5% | 39.6% |
| 5nfiB02 | 2.60.40.2090 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 47.0 | 3.66e-01 | 100.0% | 88.0% |
| 4qi3A00 | 2.60.40.1210 | Mainly Beta › Sandwich › Immunoglobulin-like › Cellobiose dehydrogenase, cytochrome domain | 0.56 | 44.0 | 3.02e-01 | 88.7% | 87.9% |
| 1whqA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.56 | 42.0 | 3.92e-01 | 86.8% | 66.2% |
| 1ggpA01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.56 | 48.0 | 3.50e-01 | 98.1% | 35.6% |
| 3r9pB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.55 | 40.0 | 2.84e-01 | 79.2% | 35.0% |
| 5yvxA00 | 3.30.40.100 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › | 0.54 | 35.0 | 3.47e-01 | 73.6% | 60.0% |
| 6a97C01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.54 | 43.0 | 3.25e-01 | 86.8% | 96.9% |
| 1ddvA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 37.0 | 3.13e-01 | 75.5% | 54.8% |
| 2ltsA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.53 | 39.0 | 3.52e-01 | 86.8% | 52.3% |
| 1su0B00 | 3.90.1010.10 | Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › | 0.53 | 41.0 | 3.12e-01 | 88.7% | 47.1% |
| 2n3gA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.53 | 39.0 | 3.64e-01 | 86.8% | 66.7% |
| 2xlpB01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.52 | 40.0 | 2.51e-01 | 90.6% | 29.0% |
| 3fssA01 | 2.30.29.120 | Mainly Beta › Roll › PH-domain like › | 0.52 | 45.0 | 3.37e-01 | 100.0% | 47.8% |
| 3wewA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 41.0 | 2.84e-01 | 100.0% | 82.4% |
| 1txdA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 37.0 | 2.98e-01 | 81.1% | 36.4% |
| 3tc9A02 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.51 | 41.0 | 2.61e-01 | 98.1% | 58.2% |
| 2qmlA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 40.0 | 2.84e-01 | 92.5% | 62.2% |
| 6vp6A03 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.50 | 43.0 | 2.64e-01 | 96.2% | 21.5% |
ECOD (61)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4004358 | 252.2.1.3 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_1 | 0.81 | 61.0 | 6.25e-01 | 81.1% | 92.0% |
| 3703176 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.77 | 50.0 | 5.35e-01 | 77.4% | 79.5% |
| 3965886 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.71 | 51.0 | 5.35e-01 | 81.1% | 91.1% |
| 3331331 | 252.2.1.1 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 | 0.68 | 58.0 | 4.82e-01 | 100.0% | 87.0% |
| 5832 | 4292.1.1.1 ↗ | a+b two layers › FlaG-like › FlaG-related › FlaG-related › FlaG | 0.67 | 49.0 | 3.87e-01 | 77.4% | 39.4% |
| 3721377 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.66 | 48.0 | 3.83e-01 | 81.1% | 42.5% |
| 3842576 | 220.1.1.67 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › EVH1_PP4R3 | 0.66 | 47.0 | 3.65e-01 | 75.5% | 50.0% |
| 3480842 | 708.1.2.11 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › STEEP1 | 0.66 | 45.0 | 3.69e-01 | 71.7% | 44.0% |
| 3983782 | 2484.1.1.119 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1 | 0.66 | 48.0 | 4.08e-01 | 81.1% | 57.4% |
| 3983036 | 2484.1.1.119 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1 | 0.65 | 47.0 | 4.53e-01 | 81.1% | 83.1% |
| 3827127 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.65 | 54.0 | 4.62e-01 | 100.0% | 91.6% |
| 3586566 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.64 | 45.0 | 4.51e-01 | 77.4% | 72.7% |
| 4952918 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.64 | 47.0 | 4.06e-01 | 81.1% | 60.0% |
| 5056748 | 5.1.3.40 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylsulfotran_2 | 0.64 | 54.0 | 3.33e-01 | 100.0% | 31.4% |
| 4521118 | 2484.1.1.41 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › AnmK | 0.64 | 46.0 | 3.14e-01 | 77.4% | 42.0% |
| 5003966 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.63 | 45.0 | 4.26e-01 | 77.4% | 66.2% |
| 3624211 | 844.1.1.0 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain | 0.63 | 53.0 | 3.73e-01 | 94.3% | 30.9% |
| 3941019 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.62 | 50.0 | 4.11e-01 | 100.0% | 80.0% |
| 3990887 | 375.1.1.89 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-LITAF-like | 0.62 | 40.0 | 3.98e-01 | 98.1% | 63.6% |
| 5007359 | 2484.1.1.101 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 | 0.62 | 45.0 | 4.26e-01 | 83.0% | 71.4% |
| 3623534 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.62 | 43.0 | 3.71e-01 | 75.5% | 74.4% |
| 3458058 | 220.1.1.67 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › EVH1_PP4R3 | 0.62 | 44.0 | 3.45e-01 | 77.4% | 48.0% |
| 3382115 | 226.1.1.20 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › PF30468, PF30469 | 0.62 | 52.0 | 3.67e-01 | 100.0% | 39.5% |
| 3732875 | 708.1.2.6 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › GFA | 0.62 | 48.0 | 3.56e-01 | 84.9% | 34.3% |
| 4482319 | 5.1.11.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › eIF2A | 0.61 | 53.0 | 3.08e-01 | 100.0% | 14.9% |
| 3548957 | 5.1.4.241 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › eIF2A | 0.61 | 52.0 | 3.12e-01 | 100.0% | 16.4% |
| 4318534 | 2484.1.1.11 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ribosomal_L18p | 0.61 | 44.0 | 3.52e-01 | 79.2% | 55.8% |
| 4338527 | 5.1.5.145 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › eIF2A | 0.61 | 52.0 | 3.10e-01 | 100.0% | 15.9% |
| 3462961 | 5.1.4.122 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF295 | 0.61 | 44.0 | 2.90e-01 | 81.1% | 31.4% |
| 3183036 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.61 | 43.0 | 3.39e-01 | 79.2% | 36.2% |
| 3932526 | 220.1.1.2 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 | 0.60 | 42.0 | 3.22e-01 | 75.5% | 45.2% |
| 3583345 | 5.1.4.288 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › APEH_N | 0.60 | 50.0 | 2.97e-01 | 98.1% | 16.8% |
| 4298544 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.60 | 50.0 | 3.93e-01 | 100.0% | 68.0% |
| 5003239 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.60 | 52.0 | 3.30e-01 | 100.0% | 27.1% |
| 5049605 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.59 | 48.0 | 4.83e-01 | 92.5% | 90.9% |
| 3414887 | 220.1.1.11 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru | 0.59 | 50.0 | 3.23e-01 | 100.0% | 75.3% |
| None | — | 0.59 | 41.0 | 3.09e-01 | 75.5% | 38.0% | |
| 3574323 | 3223.1.1.1 ↗ | beta sandwiches › Amiloride-sensitive cation channel 2 › Amiloride-sensitive cation channel 2 › Amiloride-sensitive cation channel 2 › ASC | 0.59 | 45.0 | 2.63e-01 | 96.2% | 9.3% |
| 3787626 | 220.1.1.4 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 | 0.58 | 41.0 | 3.29e-01 | 75.5% | 56.5% |
| 3518515 | 7579.1.1.0 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases | 0.58 | 47.0 | 2.74e-01 | 100.0% | 22.9% |
| 4028738 | 5.1.4.11 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Clathrin_propel | 0.58 | 47.0 | 2.99e-01 | 100.0% | 19.7% |
| 1297469 | 11.1.4.15 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Mfa2 | 0.58 | 48.0 | 3.55e-01 | 100.0% | 80.1% |
| 3316791 | 5.1.5.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 | 0.57 | 50.0 | 3.05e-01 | 100.0% | 19.7% |
| 5009170 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.57 | 46.0 | 4.20e-01 | 94.3% | 78.7% |
| 3494433 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.56 | 43.0 | 3.46e-01 | 90.6% | 39.5% |
| 3218417 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.56 | 45.0 | 3.97e-01 | 94.3% | 95.3% |
| 4945290 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.56 | 48.0 | 4.69e-01 | 100.0% | 90.0% |
| 4373898 | 5.1.11.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed | 0.55 | 48.0 | 2.71e-01 | 100.0% | 21.2% |
| 3392668 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.55 | 40.0 | 3.88e-01 | 86.8% | 73.8% |
| 3927135 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.55 | 38.0 | 2.43e-01 | 75.5% | 12.5% |
| 3383781 | 252.1.1.0 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD | 0.55 | 43.0 | 4.43e-01 | 98.1% | 98.0% |
| 3496419 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.55 | 44.0 | 2.49e-01 | 100.0% | 11.6% |
| 3929231 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.54 | 41.0 | 3.18e-01 | 86.8% | 44.6% |
| 4936581 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.54 | 47.0 | 4.08e-01 | 100.0% | 68.2% |
| 3924385 | 1.1.15.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like | 0.53 | 45.0 | 2.84e-01 | 96.2% | 24.3% |
| 3934185 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.53 | 44.0 | 3.26e-01 | 100.0% | 35.3% |
| 3299580 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.52 | 40.0 | 3.83e-01 | 92.5% | 75.4% |
| 1349153 | 5.1.11.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › eIF2A | 0.52 | 42.0 | 2.54e-01 | 100.0% | 27.2% |
| 4088884 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.52 | 42.0 | 3.63e-01 | 100.0% | 78.9% |
| 3305941 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.51 | 37.0 | 3.10e-01 | 86.8% | 40.8% |
| 3299579 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.50 | 37.0 | 3.56e-01 | 88.7% | 68.6% |