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LacPavin_0818_WC55_scaffold_2946_prodigal-single.1__X__X__00182
Bact-VirLacPavin_0818_WC55_scaffold_2946_prodigal-single.1__X__X__00182
Identity
- Kingdom:
- phage
Quality
87.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 20-83
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4hteA01 | 1.20.58.1730 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.62 | 38.0 | 2.95e-01 | 93.8% | 27.3% |
| 3cexA00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.57 | 49.0 | 3.67e-01 | 100.0% | 92.9% |
| 4fwdA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.55 | 46.0 | 4.35e-01 | 96.9% | 85.9% |
| 1qrvA00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.54 | 38.0 | 3.72e-01 | 81.2% | 65.8% |
| 1x4pA00 | 1.10.10.790 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module | 0.54 | 35.0 | 3.54e-01 | 76.6% | 65.2% |
| 2x2vA00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.54 | 34.0 | 3.35e-01 | 75.0% | 58.8% |
| 4b4yA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.53 | 37.0 | 2.95e-01 | 85.9% | 32.9% |
| 6ianC01 | 1.10.418.70 | Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Intraflagellar transport protein 81, N-terminal domain | 0.52 | 43.0 | 3.64e-01 | 100.0% | 68.3% |
| 2kr5A01 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.52 | 36.0 | 3.45e-01 | 75.0% | 100.0% |
| 4ga4A01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.51 | 31.0 | 3.12e-01 | 71.9% | 58.2% |
| 1e9rA02 | 1.10.8.80 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Magnesium chelatase subunit I, C-Terminal domain | 0.51 | 39.0 | 3.37e-01 | 95.3% | 49.6% |
| 3pfyA02 | 6.10.20.180 | Special › Helix non-globular › Arc Repressor Mutant, subunit A › | 0.51 | 39.0 | 4.05e-01 | 98.4% | 98.2% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3971256 | 101.1.4.13 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Xre_MbcA_ParS_C | 0.95 | 86.0 | 7.48e-01 | 95.3% | 94.4% |
| 4116978 | 101.30.1.1 ↗ | alpha arrays › HTH › Rv2175c › Rv2175c › Xre_MbcA_ParS_C | 0.87 | 79.0 | 7.95e-01 | 98.4% | 96.9% |
| 4218671 | 101.1.4.14 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Xre_MbcA_ParS_C,Xre-like-HTH | 0.82 | 74.0 | 5.72e-01 | 100.0% | 80.0% |
| 5040644 | 101.1.4.93 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Xre-like-HTH | 0.81 | 71.0 | 5.57e-01 | 96.9% | 76.9% |
| 3088114 | 101.1.4.14 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Xre_MbcA_ParS_C,Xre-like-HTH | 0.79 | 70.0 | 5.52e-01 | 100.0% | 49.2% |
| 2409829 | 101.1.4.14 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Xre_MbcA_ParS_C,Xre-like-HTH | 0.76 | 65.0 | 4.99e-01 | 100.0% | 41.6% |
| 4146770 | 101.1.4.14 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Xre_MbcA_ParS_C,Xre-like-HTH | 0.74 | 65.0 | 5.19e-01 | 100.0% | 87.7% |
| 3381368 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.67 | 53.0 | 5.36e-01 | 98.4% | 86.2% |
| 5028710 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.57 | 46.0 | 4.47e-01 | 95.3% | 80.0% |
| 3549109 | 110.1.1.2 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › CARD | 0.56 | 48.0 | 4.22e-01 | 95.3% | 83.2% |
| 3838730 | 563.1.1.1 ↗ | alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP | 0.56 | 39.0 | 2.90e-01 | 75.0% | 51.4% |
| 3300274 | 143.1.1.2 ↗ | alpha arrays › PABP domain-like › PABC(PABP) domain › PABC(PABP) domain › PABC_AtC3H46 | 0.56 | 40.0 | 4.01e-01 | 96.9% | 78.5% |
| 3727990 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.55 | 38.0 | 2.55e-01 | 71.9% | 20.9% |
| 5015866 | 2005.1.1.14 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › PAPS_reduct | 0.55 | 38.0 | 2.61e-01 | 71.9% | 82.7% |
| 2816797 | 2003.1.2.18 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.53 | 35.0 | 2.39e-01 | 100.0% | 17.5% |
| 3575172 | 190.1.1.0 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box | 0.53 | 37.0 | 3.65e-01 | 76.6% | 69.6% |
| 3258469 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.52 | 40.0 | 2.83e-01 | 100.0% | 24.4% |
| 3798232 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.52 | 36.0 | 3.27e-01 | 73.4% | 55.7% |