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LacPavin_0818_WC55_scaffold_2946_prodigal-single.1__X__X__00205
Bact-VirLacPavin_0818_WC55_scaffold_2946_prodigal-single.1__X__X__00205
Identity
- Kingdom:
- phage
Quality
79.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 50-118
Domain cluster:
representative
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6h5hA00 | 1.10.150.110 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like | 0.85 | 49.0 | 4.89e-01 | 79.7% | 56.3% |
| 2pmrA00 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.83 | 59.0 | 5.72e-01 | 81.2% | 67.1% |
| 1e52A00 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.82 | 50.0 | 5.50e-01 | 78.3% | 76.8% |
| 4fm3A00 | 1.20.1270.390 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.80 | 54.0 | 4.75e-01 | 81.2% | 50.5% |
| 2wb7A03 | 1.20.120.870 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › pT26-6p, five-helical bundle domain | 0.76 | 68.0 | 5.31e-01 | 95.7% | 70.6% |
| 1luwA01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.75 | 51.0 | 5.27e-01 | 71.0% | 75.0% |
| 3nymA00 | 6.10.290.10 | Special › Helix non-globular › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.75 | 56.0 | 4.55e-01 | 78.3% | 74.2% |
| 2crbA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.75 | 51.0 | 4.48e-01 | 84.1% | 49.5% |
| 4e40A00 | 1.20.1260.80 | Mainly Alpha › Up-down Bundle › Ferritin › | 0.75 | 61.0 | 4.06e-01 | 87.0% | 71.4% |
| 4od4A02 | 1.20.120.1780 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › UbiA prenyltransferase | 0.72 | 58.0 | 4.83e-01 | 92.8% | 50.4% |
| 4w6vA00 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.71 | 58.0 | 3.38e-01 | 85.5% | 21.9% |
| 4i1mB01 | 1.20.120.1700 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.70 | 61.0 | 4.89e-01 | 94.2% | 59.7% |
| 1cpqA00 | 1.20.120.10 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 | 0.70 | 58.0 | 4.76e-01 | 92.8% | 58.9% |
| 8e9gJ01 | 1.20.120.1200 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ | 0.69 | 55.0 | 4.10e-01 | 100.0% | 35.3% |
| 3q1xA01 | 1.10.3130.10 | Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › serine acetyltransferase, domain 1 | 0.67 | 57.0 | 4.60e-01 | 98.6% | 48.2% |
| 2v5cA03 | 1.20.58.460 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like | 0.66 | 61.0 | 4.88e-01 | 100.0% | 56.9% |
| 1t3dA01 | 1.10.3130.10 | Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › serine acetyltransferase, domain 1 | 0.65 | 56.0 | 4.50e-01 | 100.0% | 48.6% |
| 1yvwA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.65 | 43.0 | 3.91e-01 | 84.1% | 52.2% |
| 5b00A00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.64 | 59.0 | 3.91e-01 | 100.0% | 37.9% |
| 2zj2A04 | 1.10.3380.20 | Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › | 0.64 | 59.0 | 4.36e-01 | 100.0% | 83.8% |
| 3w0oA02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.63 | 57.0 | 3.94e-01 | 100.0% | 73.3% |
| 2om6A02 | 1.10.150.400 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.62 | 50.0 | 4.84e-01 | 88.4% | 75.9% |
| 2gs4A00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.61 | 57.0 | 4.23e-01 | 100.0% | 87.3% |
| 3if8B02 | 1.20.58.730 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 42.0 | 3.76e-01 | 72.5% | 51.0% |
| 1st6A04 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.61 | 51.0 | 4.31e-01 | 92.8% | 60.7% |
| 2va8A03 | 1.10.3380.30 | Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › | 0.61 | 55.0 | 3.80e-01 | 100.0% | 64.9% |
| 3etvA01 | 1.10.287.3290 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.60 | 52.0 | 4.94e-01 | 98.6% | 92.9% |
| 2jbwA01 | 1.20.1440.110 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase | 0.59 | 54.0 | 4.70e-01 | 100.0% | 89.3% |
| 2yxhA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.58 | 43.0 | 3.61e-01 | 78.3% | 46.9% |
| 1zylA03 | 1.20.1270.170 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.58 | 45.0 | 4.04e-01 | 88.4% | 83.5% |
| 2qibB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.57 | 51.0 | 3.63e-01 | 100.0% | 43.3% |
| 1ivhA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.54 | 44.0 | 3.73e-01 | 92.8% | 54.9% |
| 4d2dA00 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.52 | 45.0 | 2.79e-01 | 100.0% | 44.9% |
| 2qgmA03 | 1.20.1440.30 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Biosynthetic Protein domain | 0.51 | 42.0 | 3.54e-01 | 97.1% | 54.3% |
| 4gywA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.50 | 46.0 | 3.96e-01 | 100.0% | 74.3% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4927173 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.86 | 63.0 | 5.84e-01 | 87.0% | 62.4% |
| 5033039 | 632.11.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like › DUF357 | 0.84 | 60.0 | 5.87e-01 | 87.0% | 69.3% |
| 5022166 | 109.4.1.922 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_9 | 0.84 | 56.0 | 3.62e-01 | 71.0% | 17.5% |
| 4992964 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.83 | 61.0 | 6.09e-01 | 81.2% | 75.7% |
| 3693444 | 5050.1.1.1 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr | 0.81 | 60.0 | 4.39e-01 | 78.3% | 62.4% |
| 3286104 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.79 | 65.0 | 5.62e-01 | 87.0% | 76.0% |
| 5058990 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.78 | 62.0 | 4.96e-01 | 82.6% | 55.3% |
| 5014075 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.78 | 64.0 | 5.82e-01 | 87.0% | 66.7% |
| 4941476 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.77 | 63.0 | 5.99e-01 | 87.0% | 75.0% |
| 5014265 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.77 | 63.0 | 5.81e-01 | 87.0% | 74.1% |
| 3246252 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.76 | 62.0 | 4.22e-01 | 100.0% | 28.1% |
| 3968183 | 3758.2.1.1 ↗ | alpha bundles › Bacterial hemolysins-like › Biopolymer transport protein ExbB › Biopolymer transport protein ExbB › MotA_ExbB | 0.76 | 52.0 | 3.89e-01 | 71.0% | 43.7% |
| 4938440 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.76 | 62.0 | 5.38e-01 | 87.0% | 74.0% |
| 4955275 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.74 | 60.0 | 5.49e-01 | 87.0% | 66.7% |
| 3584523 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.74 | 60.0 | 4.50e-01 | 87.0% | 46.9% |
| 3726431 | 3543.1.1.1 ↗ | alpha complex topology › Acid-activated urea channel › Acid-activated urea channel › Acid-activated urea channel › Gpr1_Fun34_YaaH | 0.74 | 66.0 | 4.56e-01 | 100.0% | 31.4% |
| 3660332 | 109.4.1.1263 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_16 | 0.74 | 55.0 | 4.05e-01 | 98.6% | 31.8% |
| 4126053 | 109.4.1.1509 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_12, TPR_16 | 0.74 | 55.0 | 4.02e-01 | 98.6% | 31.2% |
| 4099036 | 109.4.1.8 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1,TPR_12 | 0.73 | 54.0 | 4.00e-01 | 98.6% | 31.2% |
| 5012225 | 611.6.1.1 ↗ | alpha bundles › N-cbl like › PT26-6P helical domain › PT26-6P helical domain › PT26-6P_helical | 0.73 | 68.0 | 5.19e-01 | 100.0% | 95.9% |
| 4987192 | 3684.1.1.0 ↗ | alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like | 0.71 | 65.0 | 5.25e-01 | 98.6% | 63.7% |
| 4148010 | 632.1.1.24 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › DAGK_prokar | 0.71 | 61.0 | 5.01e-01 | 95.7% | 71.2% |
| 5003284 | 3579.1.1.0 ↗ | extended segments › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J | 0.70 | 57.0 | 4.25e-01 | 100.0% | 37.5% |
| 4952530 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.69 | 63.0 | 4.97e-01 | 98.6% | 59.3% |
| 4145393 | 3579.1.1.6 ↗ | extended segments › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › MbhD+MbhE | 0.66 | 57.0 | 4.11e-01 | 100.0% | 35.6% |
| 2527147 | 4266.1.1.3 ↗ | alpha bundles › Hyaluronidase domain-like › Hyaluronidase post-catalytic domain-like › Hyaluronidase post-catalytic domain-like › NagJ_C | 0.65 | 59.0 | 4.85e-01 | 100.0% | 63.4% |
| 4380350 | 109.4.1.1263 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_16 | 0.65 | 56.0 | 4.10e-01 | 95.7% | 38.4% |
| 4471648 | 109.4.1.8 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1,TPR_12 | 0.65 | 56.0 | 4.10e-01 | 95.7% | 38.2% |
| 4041987 | 109.4.1.5 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1 | 0.65 | 56.0 | 4.05e-01 | 95.7% | 37.1% |
| 4956465 | 4156.1.1.6 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Helicase_dom4_arc | 0.65 | 60.0 | 4.49e-01 | 100.0% | 94.8% |
| 5045957 | 4156.1.1.0 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like | 0.64 | 60.0 | 4.27e-01 | 100.0% | 83.8% |
| 5076762 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.64 | 60.0 | 4.75e-01 | 100.0% | 55.4% |
| 4538988 | 109.4.1.195 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_11 | 0.64 | 55.0 | 4.22e-01 | 95.7% | 44.1% |
| 4942882 | 4156.1.1.6 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Helicase_dom4_arc | 0.64 | 59.0 | 4.32e-01 | 100.0% | 82.9% |
| 4975050 | 3843.1.1.0 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K | 0.64 | 57.0 | 5.52e-01 | 100.0% | 88.0% |
| 4543016 | 109.4.1.1690 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_17, TPR_16 | 0.63 | 54.0 | 4.19e-01 | 95.7% | 45.0% |
| 5073406 | 4156.1.1.6 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Helicase_dom4_arc | 0.63 | 58.0 | 4.76e-01 | 100.0% | 94.2% |
| 5063700 | 3843.1.1.32 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › CstA | 0.63 | 53.0 | 4.39e-01 | 100.0% | 51.5% |
| 3972286 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.63 | 55.0 | 3.72e-01 | 94.2% | 29.1% |
| 3315457 | 109.4.1.1666 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, TPR_10 | 0.61 | 57.0 | 4.11e-01 | 100.0% | 55.4% |
| 4979026 | 633.21.1.0 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 | 0.61 | 51.0 | 4.11e-01 | 97.1% | 48.5% |
| 3555180 | 5001.1.1.5 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 | 0.60 | 50.0 | 3.29e-01 | 92.8% | 24.6% |
| 5013248 | 601.3.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › Hpt | 0.60 | 55.0 | 4.44e-01 | 100.0% | 54.4% |
| 3278268 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.58 | 47.0 | 3.60e-01 | 92.8% | 37.1% |
| 3733654 | 109.4.1.356 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans | 0.56 | 50.0 | 2.99e-01 | 97.1% | 15.2% |