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LacPavin_0818_WC55_scaffold_2946_prodigal-single.1__X__X__00248
Bact-VirLacPavin_0818_WC55_scaffold_2946_prodigal-single.1__X__X__00248
Identity
- Kingdom:
- phage
Quality
94.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-127
Domain cluster:
rep: SR-VP_0-2_scaffold_141_6534022_prodigal-single.1__X__X__00113__D6-111
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5i4eA01 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.71 | 24.0 | 3.81e-01 | 74.6% | 80.4% |
| 4nozB01 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.70 | 20.0 | 3.05e-01 | 97.6% | 55.6% |
| 6bogA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 25.0 | 3.99e-01 | 85.7% | 82.7% |
| 7u32F02 | 2.30.30.10 | Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral | 0.69 | 28.0 | 4.33e-01 | 83.3% | 94.1% |
| 2do3A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 26.0 | 3.94e-01 | 84.9% | 84.3% |
| 4m4zA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.67 | 26.0 | 4.13e-01 | 82.5% | 93.6% |
| 2eifA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.67 | 33.0 | 4.58e-01 | 91.3% | 100.0% |
| 3goxA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 27.0 | 4.09e-01 | 85.7% | 90.2% |
| 3h0gH00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.66 | 56.0 | 5.72e-01 | 90.5% | 97.6% |
| 4ytlA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 25.0 | 3.85e-01 | 85.7% | 86.0% |
| 3hkzG00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.65 | 54.0 | 5.67e-01 | 91.3% | 97.3% |
| 1b7tA02 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.65 | 25.0 | 3.83e-01 | 85.7% | 84.6% |
| 2e70A00 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 25.0 | 3.33e-01 | 85.7% | 62.0% |
| 5dmxB02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.62 | 38.0 | 3.55e-01 | 96.0% | 48.7% |
| 1x6gA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.62 | 30.0 | 3.59e-01 | 85.7% | 67.9% |
| 1fr3A00 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.62 | 31.0 | 4.01e-01 | 88.9% | 86.6% |
| 2eczA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.62 | 29.0 | 3.79e-01 | 84.1% | 78.6% |
| 1lckA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.62 | 29.0 | 3.95e-01 | 84.9% | 89.8% |
| 1ib8A02 | 2.30.30.180 | Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain | 0.62 | 27.0 | 3.59e-01 | 84.9% | 74.6% |
| 2v1qA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.62 | 29.0 | 3.93e-01 | 84.1% | 90.0% |
| 1b9mB02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.62 | 28.0 | 3.57e-01 | 87.3% | 72.2% |
| 2ckkA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 27.0 | 3.88e-01 | 85.7% | 92.5% |
| 1zuuA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.61 | 28.0 | 3.96e-01 | 83.3% | 94.6% |
| 1ybyA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.61 | 31.0 | 4.08e-01 | 89.7% | 93.8% |
| 2cudA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.61 | 30.0 | 3.62e-01 | 86.5% | 70.9% |
| 1x6bA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.61 | 29.0 | 3.84e-01 | 84.9% | 85.9% |
| 2evrA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.59 | 30.0 | 3.80e-01 | 84.9% | 82.4% |
| 2kxcA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.59 | 28.0 | 3.67e-01 | 84.9% | 82.1% |
| 1k1zA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.59 | 30.0 | 3.72e-01 | 85.7% | 78.2% |
| 1wfqA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 34.0 | 4.11e-01 | 94.4% | 95.9% |
| 3i35A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.58 | 28.0 | 3.68e-01 | 84.9% | 93.0% |
| 2it1A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 30.0 | 3.87e-01 | 79.4% | 100.0% |
| 2e5kA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.55 | 27.0 | 3.60e-01 | 85.7% | 90.6% |
| 3f3fD01 | 2.20.25.500 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.55 | 25.0 | 3.47e-01 | 73.0% | 100.0% |
| 1z1bA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.54 | 24.0 | 3.39e-01 | 81.7% | 91.2% |
| 5suhA02 | 3.30.70.1710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain | 0.53 | 34.0 | 3.70e-01 | 96.0% | 78.6% |
| 2cqoA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 34.0 | 3.82e-01 | 95.2% | 88.0% |
| 2odhA02 | 3.30.70.3570 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MvaI/BcnI restriction endonuclease, recognition domain | 0.53 | 38.0 | 4.00e-01 | 79.4% | 85.5% |
| 5i4dA02 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.52 | 30.0 | 3.65e-01 | 86.5% | 90.8% |
| 2eqsA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 33.0 | 3.73e-01 | 92.1% | 87.6% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4358761 | 2.1.1.10 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP | 0.69 | 32.0 | 4.31e-01 | 87.3% | 84.6% |
| 4582456 | 2.1.1.10 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP | 0.68 | 32.0 | 4.20e-01 | 88.1% | 80.0% |
| 4957484 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.67 | 34.0 | 3.85e-01 | 96.0% | 62.0% |
| 4934441 | 2.1.1.13 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-5a | 0.67 | 31.0 | 4.24e-01 | 87.3% | 85.9% |
| 4948189 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.67 | 57.0 | 5.92e-01 | 91.3% | 100.0% |
| 1140051 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.66 | 27.0 | 4.15e-01 | 84.1% | 93.9% |
| 4946166 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.66 | 32.0 | 4.47e-01 | 92.1% | 98.3% |
| 4955898 | 2.1.1.27 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RNA_pol_Rpb8 | 0.65 | 53.0 | 5.68e-01 | 89.7% | 100.0% |
| 4051852 | 2.1.1.10 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP | 0.65 | 34.0 | 4.51e-01 | 94.4% | 98.5% |
| 4050524 | 2.1.1.10 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP | 0.64 | 35.0 | 4.50e-01 | 93.7% | 100.0% |
| 3317544 | 2.1.1.10 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP | 0.63 | 34.0 | 4.47e-01 | 93.7% | 100.0% |
| 4434149 | 2.1.1.10 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP | 0.63 | 34.0 | 4.39e-01 | 93.7% | 100.0% |
| 4176687 | 2.1.1.10 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP | 0.63 | 33.0 | 4.29e-01 | 90.5% | 95.4% |
| 4124811 | 2.1.1.10 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP | 0.61 | 33.0 | 4.29e-01 | 94.4% | 100.0% |
| 2502895 | 2.27.1.0 ↗ | beta barrels › OB-fold | 0.61 | 31.0 | 3.82e-01 | 92.1% | 77.9% |
| 4032291 | 2.1.1.10 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP | 0.60 | 33.0 | 4.17e-01 | 92.1% | 98.5% |
| 4167626 | 2.1.1.10 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP | 0.60 | 32.0 | 4.23e-01 | 92.1% | 98.5% |
| 5003400 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.60 | 32.0 | 3.47e-01 | 75.4% | 61.0% |
| 4399115 | 2.1.1.13 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-5a | 0.60 | 33.0 | 4.22e-01 | 92.1% | 100.0% |
| 4039724 | 2.1.1.10 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP | 0.60 | 32.0 | 4.16e-01 | 92.1% | 98.5% |
| 4252940 | 2.1.1.10 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP | 0.59 | 32.0 | 4.12e-01 | 92.1% | 98.5% |
| 4950506 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.59 | 31.0 | 3.45e-01 | 75.4% | 61.9% |
| 3948516 | 2.1.1.10 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP | 0.59 | 31.0 | 4.00e-01 | 88.9% | 95.4% |
| 4032542 | 2.2.1.6 ↗ | beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins › SSL_OB | 0.59 | 31.0 | 3.61e-01 | 83.3% | 71.8% |
| 4628905 | 2.1.1.10 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP | 0.58 | 32.0 | 4.03e-01 | 90.5% | 98.5% |
| 4100221 | 2.1.1.10 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP | 0.58 | 31.0 | 4.05e-01 | 94.4% | 98.5% |
| 3898672 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 28.0 | 3.65e-01 | 86.5% | 84.6% |
| 4387556 | 3468.1.1.1 ↗ | a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HIRAN | 0.58 | 35.0 | 3.84e-01 | 94.4% | 74.7% |
| 4168836 | 2.1.1.10 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP | 0.58 | 32.0 | 4.02e-01 | 92.1% | 95.7% |
| 4453243 | 2.1.1.219 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_cyt-4 | 0.57 | 34.0 | 3.96e-01 | 92.1% | 84.7% |
| 4987937 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.57 | 40.0 | 4.02e-01 | 70.6% | 95.2% |
| 3469800 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.56 | 29.0 | 3.47e-01 | 86.5% | 75.0% |
| 3479037 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 29.0 | 3.46e-01 | 86.5% | 75.0% |
| 4528716 | 3784.1.1.0 ↗ | a+b two layers › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related | 0.56 | 32.0 | 3.54e-01 | 83.3% | 68.6% |
| 3932882 | 2.1.1.81 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rrp44_S1 | 0.55 | 34.0 | 4.09e-01 | 89.7% | 96.2% |
| 5050610 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 31.0 | 3.81e-01 | 91.3% | 100.0% |
| 3578855 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 29.0 | 3.45e-01 | 86.5% | 81.2% |