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LacPavin_0818_WC55_scaffold_2946_prodigal-single.1__X__X__00274

Bact-Vir

LacPavin_0818_WC55_scaffold_2946_prodigal-single.1__X__X__00274

Identity

Kingdom:
phage

Quality

89.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-71
PDB
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4e4fA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.66 54.0 4.28e-01 88.6% 64.5%
3t8qB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.65 53.0 4.49e-01 88.6% 76.5%
4xw3A00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.65 47.0 3.46e-01 77.1% 53.2%
2fbeA00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.65 47.0 3.45e-01 77.1% 56.4%
1gd5A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.65 51.0 4.24e-01 88.6% 93.1%
3rr1A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.65 52.0 4.18e-01 88.6% 65.0%
3bjsA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.64 52.0 4.39e-01 88.6% 90.6%
2x8nA01 3.30.2020.40 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › Uncharacterised protein PF10387, DUF2442 0.64 49.0 4.41e-01 82.9% 81.4%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.64 46.0 4.30e-01 77.1% 87.8%
2aq5A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.64 54.0 3.44e-01 94.3% 32.5%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.64 53.0 3.38e-01 92.9% 20.9%
3s2kB01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.61 52.0 3.47e-01 95.7% 26.1%
3luuA00 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.61 50.0 4.60e-01 88.6% 95.5%
4oddA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 51.0 3.96e-01 91.4% 63.1%
4nsxA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 50.0 3.32e-01 95.7% 25.6%
5ic7A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 52.0 3.34e-01 97.1% 25.0%
1pguA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 50.0 3.43e-01 95.7% 27.4%
2nqlA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.60 47.0 3.66e-01 88.6% 74.4%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 40.0 4.48e-01 75.7% 100.0%
1dzkA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 48.0 3.85e-01 91.4% 64.2%
3sszA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.59 46.0 3.83e-01 87.1% 82.0%
2czoA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.59 47.0 3.90e-01 88.6% 93.8%
6bg2A02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 41.0 3.42e-01 72.9% 76.8%
4cc9A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 49.0 3.26e-01 95.7% 24.4%
1npeA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.59 50.0 3.42e-01 97.1% 39.5%
3cnwA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 40.0 3.25e-01 98.6% 35.5%
3ugvA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.58 46.0 3.89e-01 90.0% 82.5%
2sliA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 43.0 3.18e-01 81.4% 66.3%
2dk7A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.56 36.0 3.57e-01 85.7% 61.6%
1b44D00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 42.0 3.75e-01 82.9% 74.5%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 39.0 4.24e-01 72.9% 96.4%
3ntkB01 2.40.50.790 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 41.0 3.88e-01 80.0% 88.4%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.55 39.0 3.96e-01 80.0% 77.6%
3b79A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.55 38.0 3.22e-01 74.3% 44.0%
3flpA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 46.0 3.36e-01 100.0% 35.9%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.54 42.0 2.96e-01 85.7% 43.3%
5eoxB03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 37.0 3.09e-01 71.4% 93.8%
3v0rA01 2.40.350.20 Mainly Beta › Beta Barrel › AOC barrel-like › 0.53 46.0 3.82e-01 100.0% 55.0%
2mqdA00 3.30.1460.60 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.53 37.0 3.22e-01 74.3% 53.8%
4l1nA00 2.40.128.660 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF15525, DUF4652 0.53 43.0 3.36e-01 91.4% 52.8%
1j0wB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 44.0 3.93e-01 100.0% 65.0%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 44.0 4.16e-01 94.3% 77.0%
2xvsA00 2.40.50.550 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 43.0 3.40e-01 97.1% 82.5%
4pwyA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 42.0 2.95e-01 94.3% 45.2%
3sqiA02 1.10.443.20 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Centromere DNA-binding protein complex CBF3 subunit, domain 2 0.51 39.0 2.65e-01 84.3% 62.2%
1vwxH02 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.51 41.0 3.67e-01 91.4% 68.9%
3ic9A03 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 35.0 2.98e-01 71.4% 96.7%
4wfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 37.0 3.06e-01 82.9% 62.1%
2wfwB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 37.0 3.82e-01 80.0% 85.1%
2vseA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.50 41.0 3.39e-01 94.3% 90.8%
3f42A00 3.30.1310.10 Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › Nucleoid-associated protein YbaB-like domain 0.50 30.0 2.78e-01 84.3% 45.2%
1tqzA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 41.0 3.56e-01 97.1% 76.4%
3k1lA02 3.30.457.30 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.50 38.0 3.58e-01 85.7% 65.6%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1489664 3933.1.1.1 a+b two layers › Uncharacterized protein YPO2434 › Uncharacterized protein YPO2434 › Uncharacterized protein YPO2434 › KTSC 0.84 72.0 7.28e-01 100.0% 92.9%
4501642 3933.1.1.1 a+b two layers › Uncharacterized protein YPO2434 › Uncharacterized protein YPO2434 › Uncharacterized protein YPO2434 › KTSC 0.84 73.0 7.34e-01 100.0% 94.3%
4973393 3933.1.1.1 a+b two layers › Uncharacterized protein YPO2434 › Uncharacterized protein YPO2434 › Uncharacterized protein YPO2434 › KTSC 0.78 71.0 6.96e-01 100.0% 94.7%
3247128 2484.1.1.190 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FBA_2 0.75 55.0 3.68e-01 77.1% 23.1%
3963978 234.3.1.0 a+b two layers › Microbial ribonucleases-like › Colicin D nuclease domain › Colicin D nuclease domain 0.74 48.0 4.30e-01 70.0% 48.4%
3947081 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.70 52.0 5.40e-01 78.6% 95.3%
3933126 5.1.11.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › eIF2A 0.64 54.0 3.31e-01 95.7% 20.7%
3849084 5.1.11.11 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › WD40 0.64 53.0 3.27e-01 94.3% 17.3%
5032559 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.64 51.0 4.71e-01 87.1% 83.3%
3923579 5.1.4.167 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR19_1st 0.63 54.0 3.43e-01 95.7% 21.9%
3595133 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 53.0 3.44e-01 95.7% 40.0%
3669779 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.63 50.0 4.05e-01 88.6% 95.0%
3258053 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.62 54.0 3.38e-01 100.0% 82.2%
3886970 5.1.4.130 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › AAA_16 0.61 51.0 2.98e-01 95.7% 12.1%
3396559 5.1.4.266 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_IFT122_1st 0.61 52.0 3.28e-01 95.7% 20.3%
3867635 5.1.3.2 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Ldl_recept_b 0.61 51.0 3.48e-01 95.7% 28.1%
3372105 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.61 50.0 4.19e-01 92.9% 63.2%
3798433 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 51.0 3.21e-01 95.7% 20.0%
3477236 5.1.11.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed 0.60 51.0 2.89e-01 95.7% 10.2%
3301183 4263.2.1.0 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain 0.60 44.0 4.28e-01 78.6% 93.8%
3994170 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 51.0 3.72e-01 95.7% 37.2%
4373021 2.4.1.6 beta barrels › OB-fold › MOP-like › MOP-like › CysA_C_terminal 0.60 40.0 3.66e-01 82.9% 49.5%
3367529 5.1.3.234 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF7899 0.60 49.0 3.42e-01 92.9% 57.1%
193502 218.1.1.1 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.60 47.0 3.78e-01 88.6% 82.8%
3242411 719.2.1.1 beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.60 48.0 4.15e-01 88.6% 89.1%
3272228 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 51.0 3.39e-01 95.7% 29.8%
3427602 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.59 48.0 3.23e-01 94.3% 29.8%
3481284 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 43.0 3.52e-01 77.1% 75.6%
3393795 77.1.1.3 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › MORN_DRC7 0.59 47.0 3.11e-01 84.3% 84.6%
3744503 2484.8.1.1 mixed a+b and a/b › Ribonuclease H-like › Separase pseudo-protease domain (PPD) › Separase pseudo-protease domain (PPD) › Peptidase_C50 0.59 40.0 2.71e-01 71.4% 84.6%
3415471 277.1.1.0 a+b two layers › PX domain › PX domain › PX domain 0.59 44.0 3.82e-01 81.4% 91.8%
3494093 11.1.1.414 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TMEM106 0.59 42.0 3.41e-01 77.1% 72.9%
3411333 3131.1.1.1 a+b two layers › FYR domain › FYR domain › FYR domain › FYRN,FYRC 0.58 44.0 3.44e-01 81.4% 80.0%
4204473 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.58 50.0 3.34e-01 100.0% 50.2%
3614613 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.58 46.0 3.47e-01 87.1% 42.9%
5033586 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 47.0 3.42e-01 95.7% 33.5%
4118167 4071.1.1.1 beta barrels › BH3618-like › BH3618-like › BH3618-like › FliW 0.56 47.0 3.87e-01 97.1% 87.9%
4891046 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 47.0 3.75e-01 95.7% 47.0%
5018098 2.14.1.6 beta barrels › OB-fold › HupF/HypC-like › HupF/HypC-like › DUF3006 0.56 37.0 3.67e-01 75.7% 64.0%
3714740 77.2.1.1 beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.55 39.0 3.35e-01 75.7% 50.8%
3697558 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.55 43.0 3.79e-01 85.7% 69.5%
3993395 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.55 45.0 4.43e-01 91.4% 89.3%
2881070 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.55 45.0 3.98e-01 91.4% 65.0%
5002774 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.55 39.0 3.27e-01 74.3% 47.5%
4087683 4071.1.1.1 beta barrels › BH3618-like › BH3618-like › BH3618-like › FliW 0.55 46.0 3.71e-01 97.1% 87.6%
3407819 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 42.0 3.77e-01 84.3% 74.0%
3300781 5.1.4.226 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF7899 0.54 43.0 3.09e-01 91.4% 37.8%
3924523 844.1.1.0 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.54 44.0 3.16e-01 90.0% 74.8%
3959289 2003.1.2.69 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NAD_binding_8, Pyr_redox_3 0.54 35.0 2.64e-01 87.1% 24.7%
4070418 4071.1.1.1 beta barrels › BH3618-like › BH3618-like › BH3618-like › FliW 0.53 44.0 3.63e-01 97.1% 87.9%
4955688 2.21.1.5 beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › PF27234 0.53 44.0 3.37e-01 92.9% 57.6%
4500981 4071.1.1.1 beta barrels › BH3618-like › BH3618-like › BH3618-like › FliW 0.52 43.0 3.70e-01 98.6% 98.4%
4082596 3943.1.1.0 beta sandwiches › Flagellar hook-associated protein 1 beta-sandwich domains › Flagellar hook-associated protein 1 beta-sandwich domains › Flagellar hook-associated protein 1 beta-sandwich domains 0.51 38.0 3.77e-01 81.4% 74.7%
3257763 2003.1.2.18 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.50 39.0 2.44e-01 84.3% 88.6%
3282683 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.50 43.0 3.13e-01 95.7% 53.3%
3573828 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.50 34.0 3.15e-01 72.9% 90.0%