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LacPavin_0818_WC55_scaffold_2946_prodigal-single.1__X__X__00284

Bact-Vir

LacPavin_0818_WC55_scaffold_2946_prodigal-single.1__X__X__00284

Identity

Kingdom:
phage

Quality

71.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 135-191
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bzvB00 3.40.1690.10 Alpha Beta › 3-Layer(aba) Sandwich › name from scop › secretion proteins EscU 0.54 38.0 3.47e-01 75.4% 96.2%
2uv8A04 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 41.0 2.44e-01 96.5% 61.1%
4nlcA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 35.0 2.34e-01 73.7% 61.1%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5047447 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.69 54.0 4.27e-01 86.0% 100.0%
5058860 1.1.3.2 beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.63 43.0 4.41e-01 71.9% 76.4%
3467262 1.1.11.0 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain 0.60 51.0 3.87e-01 98.2% 90.3%
3443522 1.1.1.10 beta barrels › cradle loop barrel › RIFT-related › acid protease › TAXi_N 0.57 45.0 3.26e-01 94.7% 89.2%
4028147 221.1.1.2 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.54 36.0 3.45e-01 70.2% 91.4%
3904275 5.1.4.12 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.50 40.0 2.46e-01 100.0% 91.5%
4368436 5.1.4.12 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.50 40.0 2.70e-01 100.0% 56.6%
D2 medium residues 1-68
PDB
Domain cluster: representative