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LacPavin_0818_WC55_scaffold_2946_prodigal-single.1__X__X__00284
Bact-VirLacPavin_0818_WC55_scaffold_2946_prodigal-single.1__X__X__00284
Identity
- Kingdom:
- phage
Quality
71.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 135-191
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bzvB00 | 3.40.1690.10 | Alpha Beta › 3-Layer(aba) Sandwich › name from scop › secretion proteins EscU | 0.54 | 38.0 | 3.47e-01 | 75.4% | 96.2% |
| 2uv8A04 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 41.0 | 2.44e-01 | 96.5% | 61.1% |
| 4nlcA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.51 | 35.0 | 2.34e-01 | 73.7% | 61.1% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5047447 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.69 | 54.0 | 4.27e-01 | 86.0% | 100.0% |
| 5058860 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.63 | 43.0 | 4.41e-01 | 71.9% | 76.4% |
| 3467262 | 1.1.11.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain | 0.60 | 51.0 | 3.87e-01 | 98.2% | 90.3% |
| 3443522 | 1.1.1.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › TAXi_N | 0.57 | 45.0 | 3.26e-01 | 94.7% | 89.2% |
| 4028147 | 221.1.1.2 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin | 0.54 | 36.0 | 3.45e-01 | 70.2% | 91.4% |
| 3904275 | 5.1.4.12 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema | 0.50 | 40.0 | 2.46e-01 | 100.0% | 91.5% |
| 4368436 | 5.1.4.12 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema | 0.50 | 40.0 | 2.70e-01 | 100.0% | 56.6% |
D2
medium
residues 1-68
Domain cluster:
representative