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LacPavin_0818_WC55_scaffold_2946_prodigal-single.1XX__00300

Bact-Vir

LacPavin_0818_WC55_scaffold_2946_prodigal-single.1__X__X__00300

Identity

Kingdom:: phage

Quality

68.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-75

PDB

Domain cluster: rep: NC_062735.1__YP_010355475.1__M1M13_gp086__00086__D184-269

CATH (14)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2v3aA03	3.30.390.120	Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 ›	0.62	37.0	3.76e-01	98.5%	60.9%
1q48A00	3.90.1010.10	Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A ›	0.61	46.0	3.72e-01	83.3%	73.1%
2yh9B00	3.30.1450.10	Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 ›	0.59	36.0	3.57e-01	100.0%	58.8%
3c19A02	3.10.20.300	Alpha Beta › Roll › Ubiquitin-like (UB roll) › mk0293 like domain	0.57	48.0	4.60e-01	95.5%	84.6%
1kjzA03	2.40.30.10	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors	0.57	46.0	4.21e-01	100.0%	66.3%
1wosA04	2.40.30.110	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains	0.57	46.0	4.26e-01	100.0%	70.9%
5ex2A01	2.40.100.10	Mainly Beta › Beta Barrel › Cyclophilin › Cyclophilin-like	0.56	42.0	2.96e-01	83.3%	83.4%
1gutA00	2.40.50.100	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain	0.55	33.0	3.32e-01	100.0%	56.7%
1b9mA03	2.40.50.100	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain	0.54	31.0	3.11e-01	100.0%	50.7%
1ikpA01	2.60.120.200	Mainly Beta › Sandwich › Jelly Rolls ›	0.54	47.0	3.31e-01	100.0%	50.7%
4bfeA02	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.53	40.0	3.83e-01	100.0%	70.4%
3l0qA01	3.30.420.40	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain	0.53	42.0	2.73e-01	95.5%	97.2%
3bgaA05	2.70.98.10	Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 ›	0.51	41.0	2.91e-01	100.0%	93.0%
2jmuA01	2.40.320.10	Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001	0.51	41.0	2.91e-01	93.9%	28.2%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5016579	1.1.8.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain	0.63	50.0	4.81e-01	100.0%	75.9%
5076192	3604.1.1.1 ↗	a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion	0.60	50.0	4.87e-01	92.4%	94.6%
4929236	3604.1.1.1 ↗	a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion	0.57	41.0	4.07e-01	78.8%	90.0%
4229219	1.1.8.5 ↗	beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C	0.56	46.0	4.18e-01	100.0%	66.3%
3688604	1.1.8.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain	0.56	49.0	4.22e-01	100.0%	76.2%
3980600	11.1.1.42 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PapD_C	0.55	41.0	3.92e-01	97.0%	67.1%
4027080	1.1.8.5 ↗	beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C	0.55	47.0	3.76e-01	97.0%	67.4%
4618103	1.1.7.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C	0.54	37.0	3.88e-01	80.3%	81.7%
3252292	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.51	43.0	3.82e-01	100.0%	67.0%
4518527	2484.1.1.21 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › BcrAD_BadFG	0.50	40.0	3.51e-01	97.0%	73.9%
3934677	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.50	41.0	3.33e-01	100.0%	50.7%

D2 medium residues 89-150

PDB

Domain cluster: representative

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5071008	207.2.1.22 ↗	beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix	0.81	73.0	4.99e-01	100.0%	42.9%
3348918	207.2.1.4 ↗	beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectinesterase	0.70	62.0	4.24e-01	100.0%	53.7%
3997590	208.1.1.0 ↗	beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes	0.65	54.0	5.49e-01	95.2%	100.0%
1380294	207.6.1.1 ↗	beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C › HemolysinCabind	0.60	49.0	4.03e-01	96.8%	68.0%

D3 medium residues 552-661

PDB

D4 medium residues 662-765

PDB

Domain cluster: rep: ALT_09252017_20_scaffold_16_prodigal-single.1__X__X__00349__D381-483

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3jqyC00	2.160.10.10	Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins	0.69	63.0	4.94e-01	100.0%	78.2%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3804152	5.1.4.173 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR75_2nd	0.51	42.0	3.00e-01	93.3%	48.1%