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LacPavin_0818_WC55_scaffold_2946_prodigal-single.1__X__X__00334
Bact-VirLacPavin_0818_WC55_scaffold_2946_prodigal-single.1__X__X__00334
Identity
- Kingdom:
- phage
Quality
60.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 665-771
Domain cluster:
rep: IMGVR_UViG_3300025317_000379-3300025317-Ga0209541_100625042__D773-849
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6oodA01 | 2.40.480.10 | Mainly Beta › Beta Barrel › AOC barrel-like › Allene oxide cyclase-like | 0.71 | 55.0 | 4.94e-01 | 82.2% | 95.9% |
| 1zvcA00 | 2.40.480.10 | Mainly Beta › Beta Barrel › AOC barrel-like › Allene oxide cyclase-like | 0.61 | 53.0 | 4.52e-01 | 93.5% | 63.2% |
| 4mxtA00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.60 | 43.0 | 3.51e-01 | 73.8% | 90.4% |
| 2zylA02 | 3.90.380.10 | Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 | 0.60 | 50.0 | 3.98e-01 | 90.7% | 50.7% |
| 4z48A00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.60 | 50.0 | 3.83e-01 | 89.7% | 91.3% |
| 3buuB00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.59 | 50.0 | 3.87e-01 | 88.8% | 90.0% |
| 2mhgA00 | 2.20.130.30 | Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › Protein of unknown function DUF2782 | 0.59 | 39.0 | 4.49e-01 | 93.5% | 96.0% |
| 3pgbA03 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 42.0 | 4.12e-01 | 85.0% | 69.8% |
| 1e8uA00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.58 | 46.0 | 3.09e-01 | 86.9% | 49.1% |
| 2q74A01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.57 | 46.0 | 4.32e-01 | 85.0% | 75.2% |
| 4o7iA01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.57 | 46.0 | 3.90e-01 | 87.9% | 80.8% |
| 1lshA03 | 2.20.50.20 | Mainly Beta › Single Sheet › Outer Surface Protein A; domain 2 › Lipovitellin. Chain A, domain 3 | 0.56 | 42.0 | 4.33e-01 | 78.5% | 99.0% |
| 2g18I00 | 3.40.1500.20 | Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › | 0.56 | 45.0 | 3.53e-01 | 87.9% | 57.6% |
| 3bk5A00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.56 | 46.0 | 3.62e-01 | 90.7% | 90.2% |
| 3lv0A01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.56 | 45.0 | 4.14e-01 | 86.9% | 77.7% |
| 4n81A01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.56 | 44.0 | 4.12e-01 | 85.0% | 73.5% |
| 3b8bA01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.56 | 45.0 | 3.91e-01 | 85.0% | 77.4% |
| 1x49A01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.55 | 31.0 | 3.57e-01 | 83.2% | 78.6% |
| 2p3nA01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.55 | 43.0 | 4.05e-01 | 84.1% | 80.0% |
| 3rbyA02 | 2.40.128.310 | Mainly Beta › Beta Barrel › Lipocalin › Protein HRI1, C-terminal domain | 0.55 | 33.0 | 3.49e-01 | 76.6% | 66.3% |
| 1vw4502 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.53 | 35.0 | 3.78e-01 | 83.2% | 78.3% |
| 3qmfA01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.53 | 43.0 | 4.04e-01 | 87.9% | 76.1% |
| 2c4iA01 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.53 | 40.0 | 3.89e-01 | 78.5% | 83.9% |
| 1g0hA01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.53 | 43.0 | 3.99e-01 | 87.9% | 76.6% |
| 2gtlM02 | 2.40.128.620 | Mainly Beta › Beta Barrel › Lipocalin › | 0.52 | 44.0 | 3.84e-01 | 91.6% | 68.1% |
| 2arhA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.50 | 42.0 | 3.73e-01 | 91.6% | 65.2% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1498413 | 3894.1.1.0 ↗ | beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain | 0.65 | 49.0 | 4.67e-01 | 90.7% | 66.4% |
| 3808930 | 5.3.1.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II | 0.65 | 45.0 | 4.08e-01 | 71.0% | 73.6% |
| 3943894 | 77.1.1.7 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › DUF1481 | 0.65 | 53.0 | 5.04e-01 | 92.5% | 75.2% |
| 4544603 | 3523.1.1.2 ↗ | beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › LptD_N | 0.62 | 57.0 | 4.49e-01 | 100.0% | 71.6% |
| 4165715 | 4018.1.1.2 ↗ | a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P | 0.61 | 43.0 | 3.95e-01 | 90.7% | 55.0% |
| 3164272 | 4018.1.1.2 ↗ | a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P | 0.60 | 49.0 | 4.40e-01 | 86.9% | 77.3% |
| 4012027 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.60 | 47.0 | 4.05e-01 | 82.2% | 58.8% |
| 1107912 | 71.1.1.7 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_2 | 0.60 | 43.0 | 3.51e-01 | 73.8% | 90.4% |
| 4400946 | 4018.1.1.2 ↗ | a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P | 0.60 | 49.0 | 4.34e-01 | 86.9% | 76.7% |
| 4031984 | 3894.1.1.1 ↗ | beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › Asp1 | 0.60 | 54.0 | 5.11e-01 | 100.0% | 84.0% |
| 3951365 | 4018.1.1.2 ↗ | a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P | 0.59 | 48.0 | 4.17e-01 | 86.0% | 70.0% |
| 2162624 | 3894.1.1.1 ↗ | beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › Asp1 | 0.59 | 50.0 | 4.72e-01 | 98.1% | 77.8% |
| 3996943 | 331.3.1.17 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt | 0.59 | 48.0 | 4.40e-01 | 88.8% | 82.1% |
| 3559914 | 3735.1.1.0 ↗ | beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein | 0.59 | 53.0 | 2.94e-01 | 100.0% | 24.7% |
| 166794 | 71.1.1.8 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like | 0.59 | 49.0 | 3.81e-01 | 88.8% | 88.4% |
| None | — | 0.58 | 52.0 | 2.92e-01 | 100.0% | 24.9% | |
| 3921013 | 3735.1.1.0 ↗ | beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein | 0.58 | 52.0 | 2.91e-01 | 100.0% | 24.5% |
| 3725773 | 4018.1.1.2 ↗ | a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P | 0.58 | 45.0 | 3.91e-01 | 84.1% | 71.2% |
| 3730749 | 77.3.1.0 ↗ | beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain | 0.58 | 44.0 | 4.41e-01 | 82.2% | 80.9% |
| 5046191 | 4018.1.1.2 ↗ | a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P | 0.57 | 47.0 | 4.14e-01 | 88.8% | 80.0% |
| 3925272 | 4018.1.1.2 ↗ | a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P | 0.57 | 46.0 | 3.87e-01 | 87.9% | 81.6% |
| 3237193 | 3735.1.1.14 ↗ | beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › TEN_YD-shell | 0.57 | 51.0 | 2.98e-01 | 100.0% | 39.9% |
| 4946272 | 4018.1.1.2 ↗ | a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P | 0.56 | 46.0 | 4.06e-01 | 88.8% | 80.0% |
| 4963369 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.56 | 42.0 | 3.57e-01 | 84.1% | 48.8% |
| 4929567 | 4018.1.1.2 ↗ | a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P | 0.56 | 46.0 | 4.14e-01 | 86.9% | 77.2% |
| 4470525 | 331.3.1.20 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › KshA_C | 0.56 | 47.0 | 3.63e-01 | 91.6% | 47.3% |
| 1174175 | 4018.1.1.2 ↗ | a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P | 0.56 | 46.0 | 4.07e-01 | 88.8% | 79.9% |
| 3787831 | 243.1.1.50 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › LIM_bind | 0.56 | 43.0 | 3.19e-01 | 79.4% | 51.2% |
| 166902 | 71.1.1.8 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like | 0.56 | 46.0 | 3.62e-01 | 90.7% | 90.2% |
| 4324615 | 844.1.1.2 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR | 0.56 | 39.0 | 3.50e-01 | 73.8% | 51.6% |
| 3215328 | 331.3.1.20 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › KshA_C | 0.55 | 46.0 | 3.60e-01 | 90.7% | 53.2% |
| 3574416 | 4018.1.1.2 ↗ | a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P | 0.55 | 45.0 | 3.76e-01 | 86.9% | 80.6% |
| 3222974 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.55 | 34.0 | 3.47e-01 | 86.0% | 61.9% |
| 3015419 | 867.1.1.2 ↗ | a+b three layers › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Fe_bilin_red | 0.55 | 44.0 | 3.49e-01 | 88.8% | 55.6% |
| 5080210 | 71.1.1.8 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like | 0.54 | 45.0 | 3.58e-01 | 90.7% | 89.5% |
| 3367547 | 844.1.1.4 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Scramblase | 0.54 | 47.0 | 3.96e-01 | 99.1% | 55.7% |
| 5012091 | 213.1.1.17 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › DUF1122 | 0.54 | 45.0 | 3.83e-01 | 89.7% | 61.1% |
| 4447649 | 71.1.1.8 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like | 0.53 | 43.0 | 3.40e-01 | 88.8% | 89.4% |
| 3945220 | 4018.1.1.2 ↗ | a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P | 0.53 | 42.0 | 3.86e-01 | 86.0% | 69.7% |
| 4022879 | 9.3.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like | 0.52 | 42.0 | 3.00e-01 | 88.8% | 47.1% |
| 3471910 | 4018.1.1.2 ↗ | a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P | 0.52 | 43.0 | 3.69e-01 | 89.7% | 80.6% |
| 4947620 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.51 | 41.0 | 3.28e-01 | 87.9% | 89.0% |
| 4499085 | 4018.1.1.2 ↗ | a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P | 0.51 | 41.0 | 3.46e-01 | 86.0% | 76.0% |
D2
high
residues 1224-1317
D3
medium
residues 176-265
Domain cluster:
rep: NC_055915.1__YP_010114636.1__KNV73_gp047__00224__D12-94
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4dsdA00 | 3.40.1420.30 | Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › | 0.65 | 54.0 | 4.86e-01 | 91.1% | 97.6% |
| 3holA02 | 2.40.160.90 | Mainly Beta › Beta Barrel › Porin › | 0.63 | 43.0 | 3.47e-01 | 70.0% | 71.7% |
| 1hyrC01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.58 | 42.0 | 3.34e-01 | 75.6% | 68.3% |
| 3gmvX00 | 3.10.450.730 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › BLIP domain | 0.57 | 46.0 | 3.89e-01 | 88.9% | 78.8% |
| 1kcgC00 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.56 | 41.0 | 3.39e-01 | 77.8% | 70.0% |
| 3i8tA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 40.0 | 3.45e-01 | 77.8% | 57.1% |
| 2m4lA00 | 2.40.128.360 | Mainly Beta › Beta Barrel › Lipocalin › | 0.53 | 36.0 | 3.49e-01 | 70.0% | 63.6% |
| 3ltiA01 | 3.90.1110.10 | Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 | 0.52 | 42.0 | 3.49e-01 | 88.9% | 62.4% |
| 8ainB01 | 3.10.450.250 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › S. aureus uracil DNA glycosylase inhibitor | 0.52 | 38.0 | 3.63e-01 | 76.7% | 80.0% |
| 3fssA01 | 2.30.29.120 | Mainly Beta › Roll › PH-domain like › | 0.52 | 36.0 | 3.15e-01 | 71.1% | 60.3% |
| 3ohsX02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.51 | 38.0 | 3.07e-01 | 84.4% | 36.2% |
| 3gjyA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 45.0 | 3.23e-01 | 100.0% | 92.8% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1498413 | 3894.1.1.0 ↗ | beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain | 0.62 | 52.0 | 4.60e-01 | 90.0% | 71.9% |
| 3301044 | 12.3.1.3 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim | 0.57 | 49.0 | 3.80e-01 | 95.6% | 86.8% |
| 3339476 | 897.1.1.1 ↗ | a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 | 0.56 | 44.0 | 3.51e-01 | 84.4% | 57.2% |
| 3433185 | 1094.1.1.0 ↗ | a/b three-layered sandwiches › Polycomb protein Eed insertion domain › Polycomb protein Eed insertion domain › Polycomb protein Eed insertion domain | 0.55 | 44.0 | 3.54e-01 | 91.1% | 72.2% |
| 2773872 | 5.1.5.79 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, WDR90_beta-prop_4th | 0.55 | 45.0 | 3.13e-01 | 92.2% | 54.9% |
| 3931922 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.54 | 46.0 | 3.11e-01 | 100.0% | 56.1% |
| 3781393 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.53 | 36.0 | 3.79e-01 | 72.2% | 94.0% |
| 3244141 | 5.1.4.320 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_LRRK2 | 0.52 | 44.0 | 3.06e-01 | 100.0% | 68.4% |
| 3998439 | 243.6.1.4 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA | 0.51 | 39.0 | 3.92e-01 | 86.7% | 78.9% |
D4
medium
residues 781-863
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4z48A00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.58 | 50.0 | 3.65e-01 | 96.4% | 90.8% |
| 2ebkA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.57 | 42.0 | 3.66e-01 | 78.3% | 81.2% |
| 4mxtA00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.55 | 41.0 | 3.16e-01 | 91.6% | 35.3% |
| 6p2lA02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.53 | 44.0 | 3.04e-01 | 100.0% | 54.5% |
| 6canA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 45.0 | 3.16e-01 | 98.8% | 70.9% |
| 3weoA01 | 2.60.40.1760 | Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) | 0.52 | 42.0 | 3.03e-01 | 89.2% | 88.3% |
| 3jb9L00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 44.0 | 3.16e-01 | 100.0% | 52.6% |
| 4fbcA01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.52 | 41.0 | 3.36e-01 | 90.4% | 79.3% |
| 2arhA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.52 | 42.0 | 3.48e-01 | 91.6% | 84.2% |
| 4g59C02 | 3.30.500.30 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › | 0.50 | 41.0 | 3.33e-01 | 89.2% | 79.7% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5018904 | 71.1.1.8 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like | 0.63 | 44.0 | 3.28e-01 | 72.3% | 32.8% |
| 5019857 | 71.1.1.8 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like | 0.61 | 43.0 | 3.22e-01 | 72.3% | 32.5% |
| 3818293 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.59 | 50.0 | 3.50e-01 | 94.0% | 66.4% |
| 5080210 | 71.1.1.8 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like | 0.59 | 48.0 | 3.58e-01 | 90.4% | 39.1% |
| 3971310 | 71.1.1.13 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › DUF1329 | 0.58 | 49.0 | 3.36e-01 | 92.8% | 33.6% |
| 1548777 | 71.1.1.8 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like | 0.58 | 50.0 | 3.65e-01 | 96.4% | 90.8% |
| 3493155 | 5087.3.1.2 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › MTP_lip_bd | 0.58 | 49.0 | 3.34e-01 | 95.2% | 50.5% |
| None | — | 0.54 | 46.0 | 3.19e-01 | 100.0% | 72.7% | |
| 3528889 | 4096.1.1.1 ↗ | a+b two layers › NAP-like › NAP-like › NAP-like › NAP | 0.53 | 41.0 | 2.97e-01 | 83.1% | 51.7% |
| 3421658 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.53 | 36.0 | 3.59e-01 | 78.3% | 69.4% |
| 3969692 | 7579.1.1.36 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 | 0.52 | 44.0 | 3.07e-01 | 98.8% | 71.1% |
| 4946189 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.52 | 35.0 | 3.51e-01 | 84.3% | 67.1% |
| 3953440 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.52 | 43.0 | 3.15e-01 | 94.0% | 39.6% |
| 3629721 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.52 | 44.0 | 2.89e-01 | 100.0% | 47.9% |
| 3208314 | 5.1.4.37 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 | 0.52 | 43.0 | 2.67e-01 | 98.8% | 52.3% |
| 5007980 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.51 | 35.0 | 2.60e-01 | 78.3% | 26.2% |
| 3958008 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.51 | 42.0 | 3.71e-01 | 94.0% | 82.3% |
| 4993497 | 4018.1.1.2 ↗ | a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P | 0.51 | 45.0 | 3.72e-01 | 100.0% | 56.7% |
| 3261864 | 63.1.1.0 ↗ | beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain | 0.51 | 43.0 | 3.63e-01 | 97.6% | 61.3% |
| 4638995 | 71.1.1.15 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › UCP033729 | 0.50 | 38.0 | 2.94e-01 | 80.7% | 89.7% |
| 5045692 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.50 | 37.0 | 2.53e-01 | 79.5% | 41.2% |