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LacPavin_0818_WC55_scaffold_56344_prodigal-single.1__X__X__00086

Bact-Vir

LacPavin_0818_WC55_scaffold_56344_prodigal-single.1__X__X__00086

Identity

Kingdom:
phage

Quality

89.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-51
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4urjD00 3.30.870.10 Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A 0.57 44.0 3.08e-01 89.6% 77.0%
2bw2A01 3.10.20.420 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Bypass-of-forespore C, N-terminal domain 0.56 45.0 4.42e-01 100.0% 96.4%
3kk7A01 3.30.420.400 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.55 39.0 3.18e-01 81.2% 73.4%
5ek8A01 2.60.40.3330 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 38.0 2.88e-01 72.9% 38.1%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 45.0 3.94e-01 93.8% 72.2%
3nlcA01 3.30.70.2700 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 42.0 3.69e-01 91.7% 97.4%
2bs2B01 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.52 43.0 3.43e-01 97.9% 84.9%
2vpaA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 41.0 2.87e-01 100.0% 64.7%
3u7zA00 2.170.130.30 Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › 0.52 42.0 3.47e-01 97.9% 92.8%
2xklA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 38.0 2.87e-01 89.6% 75.2%
1dgsA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 43.0 3.78e-01 97.9% 71.2%
3pl2A02 2.20.150.10 Mainly Beta › Single Sheet › putative 5-dehydro-2- deoxygluconokinase like fold › putative 5-dehydro-2- deoxygluconokinase 0.50 34.0 3.49e-01 100.0% 77.3%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3705667 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.68 51.0 3.30e-01 100.0% 18.1%
3168368 2.1.1.37 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_NTP_bind 0.59 42.0 3.22e-01 77.1% 95.7%
3914253 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.57 39.0 2.48e-01 72.9% 52.9%
3240822 7523.1.1.20 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Lig_chan-Glu_bd 0.56 47.0 3.18e-01 97.9% 26.3%
4287721 375.1.1.3 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_L33 0.56 46.0 4.35e-01 97.9% 96.7%
3351646 221.1.1.166 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PF26130 0.56 42.0 3.63e-01 95.8% 97.9%
3483729 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.54 45.0 3.37e-01 93.8% 93.3%
3573641 384.1.1.8 ↗ few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › BPTI_nem 0.53 42.0 3.73e-01 97.9% 58.4%
3752271 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.53 48.0 3.19e-01 100.0% 45.3%
3624857 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.53 38.0 3.16e-01 83.3% 88.6%
3164326 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.53 39.0 3.56e-01 87.5% 97.3%
3402677 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.52 35.0 3.45e-01 75.0% 67.2%
3697036 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.52 38.0 2.29e-01 81.2% 85.5%
3387236 2004.1.1.220 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SWI2_SNF2 0.52 41.0 2.76e-01 93.8% 47.6%
3936762 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.52 44.0 2.87e-01 100.0% 58.3%
3217805 386.1.1.366 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › BPTI_nem 0.51 41.0 3.64e-01 97.9% 60.0%
3606484 66.1.1.3 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain › Sol_Rieske_ferrdox 0.51 41.0 3.01e-01 100.0% 36.8%
3450430 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 35.0 2.60e-01 81.2% 51.4%
4031853 221.1.1.47 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Fer2_3 0.50 40.0 3.22e-01 95.8% 84.5%
3638157 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.50 37.0 2.43e-01 91.7% 19.7%
3213645 267.1.1.0 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.50 39.0 2.69e-01 100.0% 98.0%