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LacPavin_0818_WC55_scaffold_56344_prodigal-single.1__X__X__00108
Bact-VirLacPavin_0818_WC55_scaffold_56344_prodigal-single.1__X__X__00108
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-67_100-120_165-179
Domain cluster:
rep: MH673672.2__AYJ74714.1__phiFa_13__00036__D1-66_92-112_150-174
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4qbnA00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.64 | 51.0 | 5.38e-01 | 84.5% | 100.0% |
| 4dapA02 | 3.40.1350.60 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.62 | 50.0 | 4.40e-01 | 86.4% | 90.8% |
| 3s1sA01 | 3.90.1570.30 | Alpha Beta › Alpha-Beta Complex › tt1808, chain A › | 0.61 | 50.0 | 4.34e-01 | 92.2% | 79.3% |
| 3noyB02 | 3.30.413.10 | Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 | 0.60 | 41.0 | 4.23e-01 | 86.4% | 74.7% |
| 2vldA02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.57 | 50.0 | 4.99e-01 | 97.1% | 100.0% |
| 1y0kA00 | 3.40.1540.10 | Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical protein pa4535 › Protein of unknown function DUF1780, putative endonuclease | 0.56 | 46.0 | 3.85e-01 | 90.3% | 87.7% |
| 2g3wA00 | 3.10.640.10 | Alpha Beta › Roll › Restriction endonuclease-like alpha-beta roll fold › Restriction endonuclease-like alpha-beta roll domain | 0.54 | 45.0 | 3.76e-01 | 91.3% | 77.7% |
| 2d0oB00 | 3.40.50.10150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › B12-dependent dehydatase associated subunit | 0.54 | 38.0 | 3.78e-01 | 85.4% | 70.4% |
| 2ot9A01 | 3.10.640.10 | Alpha Beta › Roll › Restriction endonuclease-like alpha-beta roll fold › Restriction endonuclease-like alpha-beta roll domain | 0.53 | 44.0 | 3.74e-01 | 91.3% | 77.8% |
| 2w00A01 | 3.90.1570.50 | Alpha Beta › Alpha-Beta Complex › tt1808, chain A › | 0.53 | 42.0 | 3.68e-01 | 89.3% | 75.4% |
| 3qh4A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 46.0 | 3.33e-01 | 99.0% | 88.2% |
| 8fazD01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 40.0 | 3.21e-01 | 83.5% | 83.5% |
| 5ysqB00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.52 | 43.0 | 3.23e-01 | 92.2% | 92.1% |
| 3qtaB00 | 3.40.1550.10 | Alpha Beta › 3-Layer(aba) Sandwich › Chemotaxis protein chec › CheC-like | 0.52 | 40.0 | 3.34e-01 | 85.4% | 69.8% |
| 6p8uA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.52 | 40.0 | 3.64e-01 | 83.5% | 93.8% |
| 1hcdA00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.51 | 38.0 | 3.66e-01 | 79.6% | 98.3% |
| 1lc5A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.51 | 41.0 | 3.92e-01 | 91.3% | 73.6% |
| 2bwnB01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.51 | 42.0 | 3.66e-01 | 90.3% | 59.1% |
| 1xszA03 | 3.30.310.140 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › sec7 domains | 0.51 | 40.0 | 3.61e-01 | 90.3% | 90.4% |
| 2jmbA00 | 2.40.128.290 | Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein family Atu4866 | 0.50 | 35.0 | 3.86e-01 | 86.4% | 94.9% |
| 7mhwA01 | 2.40.128.10 | Mainly Beta › Beta Barrel › Lipocalin › | 0.50 | 38.0 | 4.02e-01 | 83.5% | 98.9% |
| 1npeA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.50 | 37.0 | 2.80e-01 | 78.6% | 93.9% |
ECOD (47)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5069954 | 2008.1.1.3 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc | 0.76 | 60.0 | 5.76e-01 | 83.5% | 89.0% |
| 3948544 | 2008.1.1.77 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NOV_C | 0.76 | 61.0 | 5.62e-01 | 85.4% | 93.8% |
| 5080723 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.75 | 61.0 | 5.26e-01 | 85.4% | 95.5% |
| 4200537 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.75 | 57.0 | 3.53e-01 | 79.6% | 39.5% |
| 5026220 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.74 | 55.0 | 4.54e-01 | 77.7% | 94.9% |
| 3822590 | 2008.1.1.77 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NOV_C | 0.72 | 57.0 | 5.48e-01 | 82.5% | 99.1% |
| 3602154 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.72 | 62.0 | 4.66e-01 | 94.2% | 79.6% |
| 3274283 | 2008.1.1.82 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RRG7 | 0.69 | 57.0 | 4.90e-01 | 89.3% | 98.1% |
| 4935732 | 2008.1.1.165 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_MjaI | 0.68 | 52.0 | 5.13e-01 | 80.6% | 93.6% |
| 3846390 | 2008.1.1.84 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Rab15_effector | 0.68 | 56.0 | 4.43e-01 | 90.3% | 85.6% |
| 4964258 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.68 | 56.0 | 4.95e-01 | 88.3% | 95.9% |
| 4976802 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.67 | 58.0 | 5.26e-01 | 92.2% | 85.2% |
| 4951680 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.67 | 56.0 | 4.58e-01 | 91.3% | 91.6% |
| 3912082 | 2008.1.1.84 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Rab15_effector | 0.66 | 54.0 | 4.28e-01 | 90.3% | 88.1% |
| 4947491 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.66 | 52.0 | 4.42e-01 | 82.5% | 82.5% |
| 4965514 | 2008.1.1.227 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF5784 | 0.65 | 58.0 | 4.50e-01 | 96.1% | 61.9% |
| 4618630 | 2008.1.1.141 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_19 | 0.65 | 50.0 | 4.70e-01 | 80.6% | 84.8% |
| 5023070 | 2008.1.1.141 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_19 | 0.65 | 51.0 | 4.63e-01 | 82.5% | 76.3% |
| 5000381 | 2008.1.1.16 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat | 0.65 | 51.0 | 4.79e-01 | 84.5% | 92.0% |
| 4152845 | 2008.1.1.11 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › SfsA | 0.64 | 51.0 | 4.47e-01 | 86.4% | 90.5% |
| 4936462 | 2008.1.1.78 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_endonuc | 0.63 | 51.0 | 4.44e-01 | 86.4% | 79.4% |
| 4525523 | 2008.1.1.85 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_TdeIII | 0.63 | 57.0 | 4.28e-01 | 100.0% | 72.0% |
| 2634195 | 2008.1.1.49 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_SinI | 0.63 | 57.0 | 4.36e-01 | 100.0% | 52.8% |
| 4640322 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.62 | 48.0 | 4.78e-01 | 80.6% | 86.7% |
| 4096163 | 2008.1.1.96 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RmuC | 0.62 | 50.0 | 4.46e-01 | 87.4% | 93.3% |
| 4959003 | 2008.1.1.114 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF4143 | 0.62 | 49.0 | 5.13e-01 | 85.4% | 100.0% |
| 4621467 | 2008.1.1.141 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_19 | 0.62 | 49.0 | 4.56e-01 | 85.4% | 76.9% |
| 5048875 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.61 | 50.0 | 4.46e-01 | 89.3% | 79.3% |
| 3952449 | 2008.1.1.114 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF4143 | 0.61 | 49.0 | 4.81e-01 | 85.4% | 99.1% |
| 4377931 | 2008.1.1.141 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_19 | 0.61 | 45.0 | 4.48e-01 | 78.6% | 86.4% |
| 5076660 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.61 | 50.0 | 4.85e-01 | 89.3% | 95.6% |
| 5051523 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.60 | 47.0 | 4.54e-01 | 85.4% | 85.8% |
| 4962258 | 2008.1.1.219 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF790 | 0.59 | 45.0 | 4.34e-01 | 80.6% | 92.2% |
| 4954702 | 2008.1.1.114 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF4143 | 0.58 | 47.0 | 4.49e-01 | 86.4% | 79.2% |
| 4653629 | 2008.1.1.144 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF27653 | 0.56 | 47.0 | 3.48e-01 | 96.1% | 82.3% |
| 5036746 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.56 | 45.0 | 3.35e-01 | 89.3% | 87.4% |
| 3386348 | 7503.1.1.19 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › PGBA_N | 0.55 | 40.0 | 4.16e-01 | 83.5% | 81.1% |
| 5064359 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.55 | 44.0 | 3.28e-01 | 88.3% | 87.1% |
| 5012100 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.54 | 44.0 | 3.32e-01 | 89.3% | 90.4% |
| 4962738 | 2003.6.1.13 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Khk | 0.54 | 42.0 | 2.89e-01 | 83.5% | 72.3% |
| 5070502 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.54 | 44.0 | 3.96e-01 | 90.3% | 100.0% |
| 10342 | 7521.1.1.1 ↗ | a/b three-layered sandwiches › B12-dependent dehydratase associated subunit › B12-dependent dehydratase associated subunit › B12-dependent dehydratase associated subunit › Dehydratase_MU | 0.54 | 38.0 | 3.78e-01 | 85.4% | 70.4% |
| 2041765 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.53 | 46.0 | 3.93e-01 | 100.0% | 68.5% |
| 3726585 | 7512.1.1.58 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › HET | 0.53 | 43.0 | 3.46e-01 | 88.3% | 60.0% |
| 3274863 | 6.1.1.11 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Fascin | 0.53 | 38.0 | 3.67e-01 | 75.7% | 98.3% |
| 5014256 | 2004.1.1.95 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF257 | 0.53 | 43.0 | 3.42e-01 | 89.3% | 87.2% |
| 3957166 | 304.43.1.0 ↗ | a+b two layers › Alpha-beta plaits › Hypothetical protein TT1725 › Hypothetical protein TT1725 | 0.51 | 36.0 | 3.72e-01 | 77.7% | 77.9% |
D2
medium
residues 68-99_121-164
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4amwA04 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.54 | 47.0 | 3.83e-01 | 100.0% | 87.2% |
| 3qp9D00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 40.0 | 2.55e-01 | 86.8% | 36.3% |
| 3vpyA00 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.51 | 43.0 | 3.52e-01 | 93.4% | 87.6% |
| 5whzH02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 38.0 | 3.30e-01 | 82.9% | 59.3% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4015763 | 7581.1.1.0 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like | 0.56 | 44.0 | 3.13e-01 | 90.8% | 95.2% |
| 3598338 | 321.1.1.0 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase | 0.52 | 43.0 | 3.08e-01 | 100.0% | 75.9% |