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LacPavin_0818_WC55_scaffold_56344_prodigal-single.1__X__X__00112
Bact-VirLacPavin_0818_WC55_scaffold_56344_prodigal-single.1__X__X__00112
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-112
Domain cluster:
rep: PHAGE-A4--js4906-25-3_S22_scaffold_24_curated_closed_complete_prodigal-single.1__X__X__00350__D109-205
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3py9A04 | 2.60.40.2560 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.63 | 36.0 | 4.25e-01 | 94.5% | 80.8% |
| 3lsoA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 31.0 | 3.43e-01 | 84.5% | 60.9% |
| 2if7B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 28.0 | 3.08e-01 | 86.4% | 56.3% |
| 6xaxA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 30.0 | 3.32e-01 | 84.5% | 67.1% |
| 6p3xB01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.53 | 41.0 | 3.58e-01 | 85.5% | 87.6% |
| 6mfaA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 33.0 | 3.80e-01 | 99.1% | 88.6% |
| 5fmvA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 38.0 | 4.22e-01 | 97.3% | 97.6% |
| 2w1nA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 35.0 | 3.92e-01 | 100.0% | 96.3% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5081982 | 11.1.1.246 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_7 | 0.64 | 30.0 | 3.28e-01 | 85.5% | 53.3% |
| 5068575 | 11.1.1.103 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB | 0.61 | 34.0 | 3.86e-01 | 85.5% | 70.6% |
| 5081978 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 28.0 | 3.21e-01 | 85.5% | 56.5% |
| 4930467 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 32.0 | 3.67e-01 | 85.5% | 70.0% |
| 3974308 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.59 | 33.0 | 3.93e-01 | 97.3% | 84.3% |
| 3580791 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.54 | 37.0 | 3.50e-01 | 86.4% | 59.2% |
| 3317726 | 11.1.4.55 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Self-incomp_S1 | 0.53 | 29.0 | 3.37e-01 | 85.5% | 77.1% |
| 3237590 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.53 | 39.0 | 4.05e-01 | 95.5% | 81.9% |
| 3365004 | 11.1.1.973 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Self-incomp_S1 | 0.52 | 29.0 | 3.21e-01 | 85.5% | 68.8% |
| 5070442 | 11.1.1.246 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_7 | 0.52 | 35.0 | 3.79e-01 | 100.0% | 83.3% |
| 5062263 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 34.0 | 3.80e-01 | 100.0% | 87.1% |
| 3806045 | 11.1.4.55 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Self-incomp_S1 | 0.52 | 28.0 | 3.31e-01 | 85.5% | 78.6% |
| 2132899 | 2492.1.1.20 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › APOBEC3 | 0.52 | 41.0 | 3.55e-01 | 87.3% | 86.3% |
| 5070935 | 11.1.1.284 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD_4 | 0.52 | 34.0 | 3.74e-01 | 100.0% | 82.2% |
| 3892240 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.51 | 38.0 | 4.05e-01 | 86.4% | 92.6% |
| 5070774 | 11.1.1.15 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD | 0.51 | 34.0 | 3.73e-01 | 100.0% | 84.4% |
D2
high
residues 119-224
Domain cluster:
rep: PHAGE-A4--js4906-25-3_S22_scaffold_24_curated_closed_complete_prodigal-single.1__X__X__00350__D214-325
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2aehA03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.73 | 54.0 | 5.35e-01 | 77.4% | 93.7% |
| 4a18P00 | 3.30.720.90 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.70 | 43.0 | 5.23e-01 | 73.6% | 100.0% |
| 4v0bA00 | 3.30.720.210 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.69 | 41.0 | 5.06e-01 | 74.5% | 100.0% |
| 3fehA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.68 | 50.0 | 4.76e-01 | 77.4% | 95.2% |
| 1z87A01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.63 | 43.0 | 4.49e-01 | 71.7% | 94.0% |
| 1asuA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.59 | 44.0 | 3.82e-01 | 78.3% | 81.5% |
| 2yxoB00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.53 | 45.0 | 3.39e-01 | 93.4% | 71.3% |
| 4jpdA00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.51 | 31.0 | 3.07e-01 | 95.3% | 56.0% |
| 2waaA02 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.51 | 42.0 | 3.41e-01 | 92.5% | 60.4% |
| 4hadB02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.50 | 38.0 | 3.15e-01 | 81.1% | 84.1% |
| 6fucA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.50 | 30.0 | 3.23e-01 | 82.1% | 69.8% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3406898 | 220.1.1.125 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_PLEKHM2 | 0.76 | 56.0 | 5.01e-01 | 76.4% | 68.8% |
| 3767718 | 220.1.1.125 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_PLEKHM2 | 0.76 | 62.0 | 5.47e-01 | 86.8% | 78.7% |
| 3398585 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.74 | 55.0 | 5.11e-01 | 76.4% | 93.1% |
| 3869545 | 220.1.1.125 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_PLEKHM2 | 0.73 | 60.0 | 5.42e-01 | 85.8% | 77.1% |
| 4266955 | 4263.2.1.1 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext | 0.70 | 41.0 | 5.01e-01 | 72.6% | 93.8% |
| 2532617 | 220.1.1.31 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › REC114-like | 0.69 | 50.0 | 4.73e-01 | 75.5% | 92.0% |
| 3252094 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.69 | 53.0 | 5.22e-01 | 82.1% | 88.7% |
| 4041935 | 4263.2.1.1 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext | 0.68 | 41.0 | 5.02e-01 | 73.6% | 98.5% |
| 3635664 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.68 | 58.0 | 5.54e-01 | 90.6% | 93.3% |
| 4666011 | 4263.2.1.0 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain | 0.66 | 45.0 | 5.08e-01 | 80.2% | 92.5% |
| 3248068 | 4263.2.1.1 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext | 0.66 | 48.0 | 5.39e-01 | 79.2% | 100.0% |
| 4481690 | 4263.2.1.1 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext | 0.66 | 43.0 | 5.08e-01 | 74.5% | 100.0% |
| 4533523 | 4263.2.1.1 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext | 0.66 | 40.0 | 4.87e-01 | 70.8% | 100.0% |
| 3700459 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.64 | 54.0 | 4.85e-01 | 92.5% | 77.3% |
| 4936566 | 2484.1.1.21 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › BcrAD_BadFG | 0.62 | 46.0 | 3.44e-01 | 77.4% | 92.2% |
| 4985980 | 2484.1.1.21 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › BcrAD_BadFG | 0.60 | 44.0 | 3.38e-01 | 76.4% | 94.1% |
| 4171807 | 2484.1.1.40 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX | 0.57 | 42.0 | 3.72e-01 | 79.2% | 78.8% |
| 3702955 | 2004.1.1.427 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RHSP, RHS_N | 0.55 | 43.0 | 3.43e-01 | 85.8% | 68.0% |
| 4444916 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.54 | 48.0 | 3.23e-01 | 96.2% | 64.7% |
| 3718212 | 2004.1.1.427 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RHSP, RHS_N | 0.53 | 45.0 | 3.21e-01 | 96.2% | 79.7% |
| 4095799 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.53 | 39.0 | 2.99e-01 | 79.2% | 64.0% |
| 3701985 | 2004.1.1.427 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RHSP, RHS_N | 0.53 | 46.0 | 3.05e-01 | 96.2% | 63.6% |
| 3228567 | 2484.1.1.162 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › F-box | 0.52 | 38.0 | 3.49e-01 | 76.4% | 72.1% |
| 3283640 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.51 | 44.0 | 3.16e-01 | 98.1% | 56.4% |