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LacPavin_0818_WC55_scaffold_56344_prodigal-single.1__X__X__00148

Bact-Vir

LacPavin_0818_WC55_scaffold_56344_prodigal-single.1__X__X__00148

Identity

Kingdom:
phage

Quality

45.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 12-75
PDB
D2 medium residues 194-328
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4g6iB01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.68 43.0 5.11e-01 97.0% 95.5%
3qzqA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.67 33.0 4.49e-01 78.5% 92.8%
2eqnA01 2.40.10.230 Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain 0.66 40.0 4.76e-01 90.4% 92.0%
8b6zA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.65 40.0 4.96e-01 88.1% 100.0%
4g6iC02 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.65 42.0 4.92e-01 94.1% 93.6%
4l8jA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.63 42.0 4.86e-01 94.1% 96.8%
3fppA01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.62 44.0 4.86e-01 100.0% 94.2%
2apoA03 3.30.70.3190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 35.0 4.10e-01 80.0% 82.6%
1d1nA00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.60 39.0 4.40e-01 94.1% 88.9%
3wbiA04 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 48.0 4.67e-01 100.0% 81.4%
2dnnA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.56 30.0 3.67e-01 72.6% 84.1%
7ffnN01 2.60.40.3200 Mainly Beta › Sandwich › Immunoglobulin-like › Alphavirus E2 glycoprotein, A domain 0.53 38.0 3.48e-01 87.4% 54.7%
3smzA03 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.53 29.0 3.30e-01 77.0% 70.1%
2vbuA01 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.53 45.0 4.59e-01 91.1% 98.5%
4qu7A00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.52 28.0 3.35e-01 73.3% 81.5%
1dn0D02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 31.0 3.62e-01 88.1% 84.0%
1m5zA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.51 32.0 3.64e-01 91.9% 89.0%
1q1lA00 3.60.150.10 Alpha Beta › 4-Layer Sandwich › Chorismate synthase, AroC fold › Chorismate synthase AroC 0.51 43.0 3.21e-01 91.1% 90.8%
3ry3A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.50 39.0 3.27e-01 100.0% 45.4%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5022644 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.72 42.0 4.96e-01 90.4% 83.2%
3744064 1.1.7.25 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AARP2CN 0.72 45.0 5.46e-01 90.4% 95.6%
3926448 1.1.7.25 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AARP2CN 0.70 46.0 5.44e-01 89.6% 94.7%
5065684 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.68 45.0 5.40e-01 89.6% 100.0%
3210962 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.67 45.0 5.27e-01 94.1% 97.9%
4969148 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 39.0 4.55e-01 81.5% 84.2%
3813200 1.1.7.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.64 43.0 4.67e-01 94.8% 80.7%
3891158 1.1.7.90 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ZNFX1 0.64 48.0 5.18e-01 94.1% 91.3%
3249414 11.1.1.29 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.64 34.0 4.20e-01 88.9% 81.2%
3945834 1.1.7.79 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Beta-barrel_RND 0.64 46.0 5.20e-01 94.8% 100.0%
3789214 1.1.7.25 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AARP2CN 0.64 46.0 5.16e-01 94.8% 97.1%
3386803 1.1.7.79 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Beta-barrel_RND 0.63 45.0 5.08e-01 94.1% 98.0%
3810482 1.1.7.46 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SMUBP-2_HCS1_1B 0.63 46.0 4.62e-01 94.1% 74.8%
3595114 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 45.0 5.09e-01 91.1% 95.2%
3944005 1.1.7.87 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 0.63 44.0 4.45e-01 97.0% 71.4%
3288675 1.1.7.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Lum_binding 0.62 45.0 4.93e-01 99.3% 91.8%
3226352 2.3.1.1 ↗ beta barrels › OB-fold › TIMP-like › TIMP-like › TIMP 0.62 34.0 3.59e-01 91.9% 57.6%
3271335 1.1.7.34 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D4 0.62 46.0 4.67e-01 100.0% 78.5%
4062509 1.1.7.91 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25940 0.61 44.0 4.93e-01 100.0% 95.2%
4969147 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 39.0 4.47e-01 89.6% 86.0%
3830342 1.1.7.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Lum_binding 0.61 44.0 4.77e-01 100.0% 90.0%
3987187 4261.1.1.1 ↗ a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.61 40.0 4.67e-01 88.1% 94.7%
4072524 1.1.7.88 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 0.61 44.0 4.81e-01 97.8% 91.8%
3795488 1.1.8.18 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › POP1_C 0.61 34.0 4.06e-01 77.0% 83.5%
3688711 1.1.7.81 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel 0.61 46.0 5.00e-01 94.1% 96.4%
3171334 1.1.7.102 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF28793 0.61 46.0 5.05e-01 94.1% 98.2%
3648026 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 47.0 4.89e-01 94.1% 89.6%
5059104 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 40.0 4.43e-01 95.6% 87.6%
5081164 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 41.0 4.51e-01 97.8% 87.3%
4023228 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 47.0 4.70e-01 100.0% 81.4%
4512233 4261.1.1.1 ↗ a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.59 36.0 4.38e-01 85.9% 92.2%
5057186 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 39.0 4.59e-01 95.6% 98.9%
3440486 1.1.7.55 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF6469 0.59 47.0 4.97e-01 94.1% 95.8%
4172447 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 33.0 4.31e-01 77.0% 100.0%
3459455 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.58 32.0 3.19e-01 76.3% 51.1%
3315510 4.1.1.246 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_Coilin 0.56 34.0 3.67e-01 83.7% 71.8%
4018781 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 40.0 4.24e-01 95.6% 87.0%
5001179 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.55 46.0 4.64e-01 94.8% 87.7%
4010415 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.55 45.0 4.39e-01 98.5% 80.7%
3683959 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.55 32.0 3.41e-01 80.7% 65.2%
4041586 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.54 27.0 3.79e-01 92.6% 100.0%
3302463 207.1.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1 0.54 38.0 2.64e-01 100.0% 20.9%
3613011 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.53 29.0 3.30e-01 74.1% 69.0%
4963049 4.1.1.486 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7098 0.53 32.0 3.99e-01 72.6% 100.0%
4969773 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.52 44.0 4.39e-01 94.8% 88.6%
3996930 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.50 32.0 3.58e-01 97.8% 84.0%
D3 medium residues 554-626_665-681
PDB
Domain cluster: representative
D4 medium residues 818-943_989-1021
PDB
D5 medium residues 944-974_1062-1083
PDB
D6 medium residues 1170-1231
PDB
D7 medium residues 1594-1631_1663-1684
PDB