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LacPavin_0818_WC55_scaffold_56344_prodigal-single.1__X__X__00191

Bact-Vir

LacPavin_0818_WC55_scaffold_56344_prodigal-single.1__X__X__00191

Identity

Kingdom:
phage

Quality

62.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 53-143
PDB
Domain cluster: rep: NC_054797.1__YP_010062729.1__KIY71_gp89__00089__D2-72
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1aqcB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 52.0 4.69e-01 92.3% 77.0%
1nrkA01 3.30.70.1630 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 35.0 3.51e-01 84.6% 54.6%
3qjhA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 39.0 3.67e-01 86.8% 56.1%
4pjeE01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 40.0 3.75e-01 86.8% 58.3%
6mjjC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 40.0 3.70e-01 86.8% 56.1%
4gc1A01 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.58 30.0 2.92e-01 89.0% 41.3%
4gouA02 2.30.29.200 Mainly Beta › Roll › PH-domain like › 0.58 49.0 4.06e-01 92.3% 58.9%
4zgfA00 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.56 45.0 3.87e-01 85.7% 91.5%
2esvD01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 38.0 3.56e-01 86.8% 57.8%
5d2lE01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 38.0 3.61e-01 86.8% 59.3%
2nmsA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 38.0 3.60e-01 86.8% 58.0%
5wkfD01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 37.0 3.54e-01 86.8% 58.3%
4czxA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 43.0 2.94e-01 85.7% 95.7%
2n54B00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 30.0 3.40e-01 84.6% 72.7%
1fo0B00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 38.0 3.53e-01 86.8% 59.8%
2wmmA02 3.30.70.3500 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MukB, hinge domain 0.53 28.0 2.67e-01 100.0% 38.9%
5eliA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 39.0 3.66e-01 86.8% 63.4%
1q8mA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 38.0 3.51e-01 86.8% 57.9%
3ottB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 40.0 2.74e-01 81.3% 38.6%
4e9jA02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.52 31.0 3.44e-01 84.6% 76.8%
2qa1A02 3.30.70.2450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 28.0 3.02e-01 85.7% 57.0%
2fp8B00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.51 39.0 2.76e-01 83.5% 100.0%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 38.0 3.59e-01 91.2% 66.7%
5j3tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 42.0 3.80e-01 92.3% 69.0%
1xd3C00 3.40.532.10 Alpha Beta › 3-Layer(aba) Sandwich › Ubiquitin C-terminal Hydrolase UCH-l3 › Peptidase C12, ubiquitin carboxyl-terminal hydrolase 0.50 35.0 2.73e-01 74.7% 98.7%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3266703 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 51.0 4.30e-01 96.7% 89.7%
4028473 331.23.1.7 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF73-100_C 0.57 37.0 3.99e-01 89.0% 78.7%
1552185 9.1.1.26 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF4847 0.56 45.0 3.89e-01 85.7% 91.5%
3845720 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 38.0 3.75e-01 86.8% 64.0%
3885552 319.1.1.5 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PIH1_CS 0.55 40.0 3.89e-01 86.8% 69.0%
3484813 319.1.1.5 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PIH1_CS 0.55 39.0 4.05e-01 85.7% 80.0%
3483693 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 38.0 3.34e-01 87.9% 50.0%
3576362 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 30.0 2.98e-01 87.9% 48.0%
4004179 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.54 39.0 2.86e-01 92.3% 30.0%
3928729 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.54 39.0 2.95e-01 75.8% 53.6%
4025137 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 48.0 3.12e-01 100.0% 88.9%
5009785 321.1.1.0 ↗ a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase 0.53 39.0 3.15e-01 84.6% 40.6%
3485978 5.1.3.7 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › NHL 0.53 42.0 2.98e-01 86.8% 93.9%
3861803 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.53 39.0 3.37e-01 86.8% 50.7%
3827261 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 39.0 3.40e-01 85.7% 54.6%
3470252 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.52 43.0 4.07e-01 91.2% 81.8%
3777215 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 40.0 3.94e-01 91.2% 76.0%
3790351 220.1.1.13 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.51 43.0 3.96e-01 92.3% 73.3%
3385818 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.51 39.0 2.79e-01 81.3% 56.8%
5037187 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.51 33.0 3.25e-01 84.6% 62.1%
3937216 220.1.1.13 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.51 42.0 3.79e-01 91.2% 65.4%
3496475 220.1.1.13 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.51 43.0 3.72e-01 92.3% 63.6%
5051015 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 40.0 3.32e-01 83.5% 53.5%
3823929 220.1.1.163 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7046 0.51 41.0 3.72e-01 95.6% 65.8%
4517523 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.51 33.0 3.21e-01 70.3% 59.0%
4356830 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 40.0 4.18e-01 85.7% 96.5%
3876027 220.1.1.13 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.50 42.0 3.58e-01 92.3% 58.7%
2140466 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 42.0 4.10e-01 90.1% 85.9%