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LacPavin_0818_WC55_scaffold_56344_prodigal-single.1__X__X__00203
Bact-VirLacPavin_0818_WC55_scaffold_56344_prodigal-single.1__X__X__00203
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-81_97-119_177-187
Domain cluster:
rep: PLM4_65_coex_sep16_scaffold_0_prodigal-single.1__X__X__00227__D1-62_103-130
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5004908 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.84 | 78.0 | 6.41e-01 | 97.4% | 100.0% |
| 5082828 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.78 | 68.0 | 5.73e-01 | 91.3% | 97.8% |
| 4951316 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.75 | 70.0 | 5.67e-01 | 99.1% | 89.5% |
| 5054129 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.75 | 65.0 | 5.28e-01 | 92.2% | 87.2% |
| 5069793 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.74 | 64.0 | 5.24e-01 | 92.2% | 89.5% |
| 4967136 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.73 | 66.0 | 5.37e-01 | 97.4% | 88.8% |
| 4551179 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.71 | 65.0 | 5.21e-01 | 97.4% | 85.7% |
| None | — | 0.69 | 33.0 | 2.56e-01 | 100.0% | 22.1% |
D2
medium
residues 82-96_120-176
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3dtoA01 | 1.10.472.50 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like | 0.63 | 43.0 | 4.12e-01 | 73.6% | 77.3% |
| 1epuA03 | 1.25.40.60 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.58 | 38.0 | 3.25e-01 | 70.8% | 39.5% |
| 1q8cA00 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.56 | 49.0 | 4.04e-01 | 98.6% | 93.2% |
| 5kbwB00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.55 | 47.0 | 3.69e-01 | 100.0% | 71.3% |
| 6ks6a01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.55 | 43.0 | 2.97e-01 | 88.9% | 85.6% |
| 1w0bA01 | 1.20.58.420 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP | 0.55 | 38.0 | 3.58e-01 | 73.6% | 88.0% |
| 3dplC03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 39.0 | 3.78e-01 | 100.0% | 69.9% |
| 3fdqA01 | 1.20.120.1030 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Motility repressor MogR, DNA-binding domain | 0.53 | 44.0 | 3.81e-01 | 97.2% | 87.7% |
| 3v9pB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 41.0 | 3.05e-01 | 86.1% | 77.2% |
| 2ijqA00 | 1.10.3450.10 | Mainly Alpha › Orthogonal Bundle › Hyaluronidase domain-like › TTHA0068-like | 0.53 | 43.0 | 3.61e-01 | 98.6% | 84.1% |
| 2lt3A01 | 1.20.58.1290 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › CarD-like, C-terminal domain | 0.53 | 46.0 | 4.19e-01 | 100.0% | 96.0% |
| 1wvuA01 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.51 | 36.0 | 2.91e-01 | 75.0% | 54.1% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5004908 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.85 | 79.0 | 5.64e-01 | 100.0% | 52.6% |
| 4930032 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.84 | 80.0 | 5.84e-01 | 100.0% | 49.4% |
| 5052475 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.80 | 72.0 | 5.78e-01 | 95.8% | 60.8% |
| 3589751 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.80 | 74.0 | 5.78e-01 | 100.0% | 54.5% |
| 5082828 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.80 | 74.0 | 5.40e-01 | 100.0% | 47.8% |
| 4995245 | 2006.1.2.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases › DHH | 0.57 | 45.0 | 3.27e-01 | 84.7% | 63.9% |
| 3173292 | 7111.1.1.1 ↗ | alpha bundles › Ubiquinol-cytochrome C chaperone, C-terminal domain › Ubiquinol-cytochrome C chaperone, C-terminal domain › Ubiquinol-cytochrome C chaperone, C-terminal domain › Ubiq_cyt_C_chap | 0.54 | 39.0 | 2.96e-01 | 79.2% | 57.0% |
| 3796164 | 314.1.1.0 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases | 0.53 | 44.0 | 2.92e-01 | 100.0% | 32.7% |
| 5017110 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.53 | 41.0 | 4.02e-01 | 87.5% | 85.0% |
| 5037454 | 7014.1.1.0 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain | 0.52 | 44.0 | 4.14e-01 | 100.0% | 83.2% |
| 4989157 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.52 | 39.0 | 3.60e-01 | 84.7% | 66.0% |
| 3801798 | 109.4.1.189 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 | 0.51 | 39.0 | 3.58e-01 | 88.9% | 73.3% |
| 5025722 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.50 | 36.0 | 3.08e-01 | 73.6% | 52.1% |
| 3168520 | 109.4.1.1881 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28745, PF28753, PF28771 | 0.50 | 42.0 | 2.57e-01 | 97.2% | 66.2% |