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LacPavin_0818_WC55_scaffold_56344_prodigal-single.1__X__X__00205
Bact-VirLacPavin_0818_WC55_scaffold_56344_prodigal-single.1__X__X__00205
Identity
- Kingdom:
- phage
Quality
90.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-86
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4v19400 | 6.20.130.20 | Special › Other non-globular › Ribosomal Protein L25; Chain P › Mitochondrial ribosomal protein L55 | 0.68 | 30.0 | 3.99e-01 | 77.4% | 77.8% |
| 2bpsA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.51 | 33.0 | 3.39e-01 | 95.2% | 67.9% |
| 2ekiA00 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.51 | 39.0 | 3.78e-01 | 81.0% | 86.0% |
| 3tuoC00 | 3.10.20.710 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › SATB, ubiquitin-like oligomerisation domain | 0.50 | 42.0 | 4.04e-01 | 89.3% | 97.8% |
| 5ib9A01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.50 | 43.0 | 3.07e-01 | 100.0% | 95.4% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4154378 | 4232.1.1.1 ↗ | few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 | 0.61 | 42.0 | 4.61e-01 | 71.4% | 100.0% |
| 3998008 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.55 | 43.0 | 3.99e-01 | 83.3% | 87.6% |
| 4032516 | 221.1.1.17 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Stap_Strp_tox_C | 0.52 | 36.0 | 3.50e-01 | 94.0% | 62.0% |
| 3420738 | 221.1.1.2 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin | 0.50 | 37.0 | 3.58e-01 | 77.4% | 82.1% |