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LacPavin_0818_WC55_scaffold_56344_prodigal-single.1__X__X__00225

Bact-Vir

LacPavin_0818_WC55_scaffold_56344_prodigal-single.1__X__X__00225

Identity

Kingdom:
phage

Quality

80.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-108
PDB
D2 high residues 112-313
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bwvA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.84 51.0 6.48e-01 94.1% 97.6%
4xrpA02 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.71 45.0 5.60e-01 79.2% 99.2%
4fypB00 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.71 51.0 4.96e-01 82.7% 67.0%
4navA00 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.70 54.0 5.69e-01 98.5% 88.4%
3qleA00 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.69 48.0 5.03e-01 94.6% 77.5%
3q3eA03 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.66 47.0 4.88e-01 94.1% 77.0%
6ejiA02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.65 44.0 4.83e-01 94.1% 82.2%
3qhpA00 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.64 44.0 4.87e-01 94.1% 86.8%
3gwzA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 52.0 4.89e-01 87.6% 97.6%
3okpA02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.62 44.0 4.62e-01 94.1% 77.2%
2ljaA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.61 35.0 4.04e-01 95.5% 74.3%
2qv7A01 3.40.50.10330 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Probable inorganic polyphosphate/atp-NAD kinase; domain 1 0.61 36.0 4.16e-01 93.6% 79.3%
1up7A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.61 41.0 4.84e-01 87.1% 98.5%
4grfA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.61 36.0 4.21e-01 94.1% 82.1%
3jyoA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.60 37.0 4.31e-01 87.6% 86.0%
1wcwA02 3.40.50.10090 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 32.0 4.02e-01 88.6% 86.6%
4p4gA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.59 37.0 4.39e-01 100.0% 90.6%
2iuyA02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.58 41.0 4.37e-01 93.6% 80.7%
5nnnA02 3.40.50.1370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase 0.57 38.0 4.29e-01 91.1% 86.8%
1zejA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 42.0 4.59e-01 100.0% 93.9%
4cqbA02 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.55 48.0 4.23e-01 94.6% 99.7%
1yh0A02 3.40.50.1370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase 0.54 40.0 4.29e-01 100.0% 88.3%
4zeoH02 3.40.50.10470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Translation initiation factor eif-2b; domain 2 0.54 37.0 4.10e-01 91.1% 87.5%
4uulA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 39.0 4.41e-01 87.1% 98.7%
5vlcA01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.53 36.0 3.96e-01 93.1% 85.4%
2oodA02 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.53 48.0 4.09e-01 98.5% 99.4%
1hyhA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 36.0 4.18e-01 88.6% 99.3%
1u3dA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.52 33.0 3.73e-01 90.6% 80.7%
3d3kA00 3.40.50.10260 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › YjeF N-terminal domain 0.52 36.0 3.49e-01 70.3% 79.0%
4kp7A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 38.0 4.29e-01 88.1% 98.7%
1vddA03 3.40.1360.10 Alpha Beta › 3-Layer(aba) Sandwich › Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 › 0.51 24.0 3.49e-01 88.6% 96.7%
4zemA02 3.40.50.10470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Translation initiation factor eif-2b; domain 2 0.51 36.0 3.92e-01 89.6% 86.9%
2rbcA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.51 47.0 4.06e-01 99.5% 96.7%
2bd0A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 45.0 4.25e-01 93.6% 94.9%
3umoA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.50 47.0 4.04e-01 100.0% 97.7%
1ipaA02 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.50 36.0 4.05e-01 94.6% 96.7%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4927648 2006.1.1.10 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NT5C 0.85 71.0 7.48e-01 93.1% 94.6%
4290919 2006.1.1.10 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NT5C 0.83 69.0 7.36e-01 93.6% 96.7%
5032548 2006.1.1.10 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NT5C 0.83 72.0 7.50e-01 94.1% 97.8%
4038162 2006.1.1.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.83 72.0 7.49e-01 93.6% 97.8%
4160431 2006.1.1.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.81 71.0 7.31e-01 93.6% 95.3%
4319375 2006.1.1.10 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NT5C 0.81 71.0 7.25e-01 94.1% 94.9%
5039917 2006.1.1.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.80 70.0 7.09e-01 98.0% 92.0%
4032470 2006.1.1.10 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NT5C 0.80 67.0 7.13e-01 96.5% 97.8%
5035723 2006.1.1.40 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › LNS2_PITM1-3 0.79 42.0 5.63e-01 92.6% 95.5%
5078078 2006.1.1.6 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Acid_phosphat_B 0.78 70.0 7.04e-01 94.1% 97.0%
5040082 2006.1.1.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.74 48.0 5.89e-01 89.6% 97.8%
3947733 2006.1.1.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.73 47.0 5.82e-01 80.2% 100.0%
4992093 2006.1.1.43 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_PNKP 0.73 50.0 5.75e-01 79.2% 93.3%
4956037 2006.1.1.6 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Acid_phosphat_B 0.71 54.0 6.01e-01 88.6% 98.1%
5057830 7512.1.1.3 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.67 44.0 4.63e-01 93.6% 72.8%
4980397 7512.1.1.3 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.66 44.0 4.73e-01 94.1% 78.2%
5029021 7512.1.1.15 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyphos_transf 0.66 46.0 4.65e-01 94.1% 70.5%
3587923 7512.1.1.8 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Epimerase_2 0.66 44.0 4.77e-01 93.6% 79.4%
5027901 7512.1.1.0 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.66 45.0 4.70e-01 94.1% 74.6%
1881676 7512.1.1.3 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.66 45.0 4.47e-01 94.1% 66.2%
4934062 7512.1.1.3 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.66 45.0 4.75e-01 93.6% 77.2%
3274590 2006.1.1.25 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_SAK_1 0.65 51.0 5.18e-01 81.7% 90.5%
4932246 7512.1.1.3 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.64 43.0 4.61e-01 93.6% 77.1%
5057756 7512.1.1.3 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.64 44.0 4.64e-01 94.1% 76.7%
4153403 7512.1.1.85 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDPGT, Glyco_tran_28_C 0.64 45.0 4.62e-01 94.1% 73.3%
4862899 7512.1.1.3 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.64 35.0 4.65e-01 81.7% 100.0%
4443469 7512.1.1.9 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › LpxB 0.64 47.0 4.80e-01 93.6% 77.0%
4473452 7512.1.1.12 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_tran_28_C 0.63 45.0 4.68e-01 94.1% 78.9%
4603510 7512.1.1.3 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.62 44.0 4.27e-01 93.6% 64.4%
4043555 7512.1.1.12 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_tran_28_C 0.62 45.0 4.40e-01 94.1% 68.4%
4288050 7512.1.1.12 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_tran_28_C 0.62 44.0 4.70e-01 94.1% 81.1%
4164467 7512.1.1.9 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › LpxB 0.62 46.0 4.57e-01 93.6% 71.6%
3726503 2006.1.1.28 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › APP1_cat 0.62 55.0 5.40e-01 94.1% 87.0%
4074910 7512.1.1.9 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › LpxB 0.62 46.0 4.72e-01 93.6% 77.5%
5000269 7512.1.1.3 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.62 40.0 4.25e-01 93.6% 72.2%
4086737 7512.1.1.12 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_tran_28_C 0.62 44.0 4.55e-01 94.1% 75.8%
4558573 7512.1.1.12 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_tran_28_C 0.62 44.0 4.32e-01 94.1% 67.0%
4033376 7512.1.1.0 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.62 44.0 4.51e-01 94.1% 75.8%
4291276 7512.1.1.12 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_tran_28_C 0.62 44.0 4.36e-01 94.1% 69.5%
4950947 7512.1.1.3 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.61 43.0 4.61e-01 93.6% 81.1%
4642483 7512.1.1.32 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_1_4 0.60 41.0 4.23e-01 93.6% 71.3%
4300469 2003.1.1.25 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Shikimate_DH,SDH_C 0.60 39.0 4.22e-01 91.1% 76.0%
4507743 2003.1.1.76 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › SDH_C 0.59 38.0 4.04e-01 90.6% 71.0%
141122 2003.1.1.41 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.59 38.0 4.12e-01 90.6% 74.7%
1513039 2003.1.1.76 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › SDH_C 0.58 37.0 4.06e-01 91.1% 76.4%
4408648 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.58 38.0 3.89e-01 90.6% 66.7%
4125936 2003.1.1.25 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Shikimate_DH,SDH_C 0.58 37.0 3.97e-01 89.6% 72.8%
4953845 2003.1.1.76 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › SDH_C 0.55 38.0 4.06e-01 98.5% 79.4%
5015024 7512.1.1.3 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.55 43.0 4.17e-01 93.6% 72.6%
4426464 7514.1.1.1 a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_1 0.55 34.0 4.08e-01 81.7% 91.3%
3227912 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.54 32.0 3.79e-01 92.6% 84.4%
3736714 2003.1.1.48 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › YjeF_N 0.54 39.0 3.67e-01 72.8% 82.5%
3681692 2003.1.5.73 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.53 43.0 3.91e-01 86.1% 90.0%
4979251 2003.6.1.1 a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.52 48.0 4.05e-01 100.0% 93.5%
None 0.51 48.0 4.13e-01 100.0% 98.1%
3947631 2003.6.1.1 a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.51 48.0 4.13e-01 100.0% 99.3%
4969707 2003.6.1.1 a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.51 46.0 4.13e-01 99.0% 98.9%
4248051 2007.1.19.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › SAT 0.50 42.0 3.75e-01 87.6% 98.2%