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Late_transcription_elongation_factor_-VLTF-
Euk-VirEptesipox_virus
Late_transcription_elongation_factor_-VLTF-__YP_009408007__Eptesipox_virus__1329402
Identity
- Accession:
- YP_009408007 ↗
- Protein ID:
- Late_transcription_elongation_factor_-VLTF-
- Kingdom:
- euk
Quality
92.1
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Pokkesviricetes›
Chitovirales›
Poxviridae›
Vespertilionpoxvirus›
Eptesipox_virus
TaxID: 1329402
Cluster
View cluster (28 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-85_202-217
Domain cluster:
rep: putative_transcriptional_elongation_factor__YP_009447997__Flamingopox_virus_FGPVKD09__2059380__D3-70_206-223
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05796.19 best | Chordopox_G2 | 93.7 | 1.60e-26 | 84.9% | 38.6% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3op9A01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.57 | 33.0 | 3.91e-01 | 81.8% | 83.8% |
| 3fseB02 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.55 | 44.0 | 3.96e-01 | 88.9% | 86.1% |
| 2o38A01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.50 | 30.0 | 3.52e-01 | 78.8% | 89.2% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4965723 | 182.1.3.3 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX › DNA_primase_lrg | 0.63 | 45.0 | 4.21e-01 | 73.7% | 70.0% |
| 4140640 | 182.1.3.3 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX › DNA_primase_lrg | 0.55 | 39.0 | 4.05e-01 | 72.7% | 91.1% |
| 4405465 | 101.1.4.5 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HNF-1_N | 0.51 | 36.0 | 3.65e-01 | 94.9% | 72.0% |
| 5037494 | 1079.1.1.8 ↗ | alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › LysE | 0.51 | 39.0 | 3.21e-01 | 83.8% | 93.3% |
D2
high
residues 88-175
Domain cluster:
rep: CPXV090_protein__NP_619877__Cowpox_virus__10243__D88-174
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05796.19 best | Chordopox_G2 | 98.4 | 6.00e-28 | 100.0% | 40.9% |