←Back to structures
Lipocalin_domain_containing_protein
Euk-VirPandoravirus_macleodensis
Lipocalin_domain_containing_protein__YP_009481489__Pandoravirus_macleodensis__2107707
Identity
- Accession:
- YP_009481489 ↗
- Protein ID:
- Lipocalin_domain_containing_protein
- Kingdom:
- euk
Quality
72.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 55-199
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08212.19 best | Lipocalin_2 | 92.6 | 3.30e-26 | 99.3% | 93.2% |
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1qwdB00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.91 | 83.0 | 7.83e-01 | 100.0% | 81.9% |
| 1gkaB00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.84 | 78.0 | 7.27e-01 | 100.0% | 81.0% |
| 3ebwA01 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.83 | 73.0 | 7.38e-01 | 100.0% | 93.7% |
| 2hzrA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.82 | 74.0 | 7.13e-01 | 100.0% | 84.5% |
| 1h91A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.81 | 74.0 | 6.84e-01 | 100.0% | 77.2% |
| 2cm4A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.81 | 70.0 | 7.02e-01 | 100.0% | 89.7% |
| 1z24A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.80 | 76.0 | 6.87e-01 | 100.0% | 78.3% |
| 1lf7A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.80 | 69.0 | 6.58e-01 | 100.0% | 79.9% |
| 3apuB00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.79 | 72.0 | 6.78e-01 | 100.0% | 81.4% |
| 1aqbA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.78 | 74.0 | 6.92e-01 | 100.0% | 86.3% |
| 3qkgA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.76 | 71.0 | 6.79e-01 | 100.0% | 88.4% |
| 1dfvA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.75 | 71.0 | 6.64e-01 | 100.0% | 83.8% |
| 1u17A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.74 | 70.0 | 6.40e-01 | 100.0% | 82.2% |
| 2kt4B01 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.74 | 68.0 | 6.87e-01 | 100.0% | 98.6% |
| 2cztA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.74 | 68.0 | 6.68e-01 | 100.0% | 92.3% |
| 4boeA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.74 | 68.0 | 6.69e-01 | 100.0% | 92.9% |
| 2ra6C00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.73 | 64.0 | 6.53e-01 | 97.9% | 95.1% |
| 4wfvA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.73 | 65.0 | 6.44e-01 | 100.0% | 90.8% |
| 4oddA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.73 | 65.0 | 6.47e-01 | 99.3% | 93.3% |
| 4xmeA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.72 | 68.0 | 6.21e-01 | 100.0% | 82.1% |
| 1dzkA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.72 | 65.0 | 6.45e-01 | 99.3% | 93.9% |
| 2xklA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.66 | 56.0 | 5.57e-01 | 100.0% | 87.9% |
| 5xbfA03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.65 | 33.0 | 4.11e-01 | 78.6% | 79.5% |
| 2c4iA01 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.63 | 48.0 | 5.31e-01 | 81.4% | 98.3% |
| 1swgC00 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.59 | 44.0 | 4.67e-01 | 76.6% | 92.9% |
| 1lshA01 | 2.30.230.10 | Mainly Beta › Roll › Lipovitellin-phosvitin complex; beta-sheet shell regions › Lipovitellin; beta-sheet shell regions, chain A | 0.57 | 44.0 | 3.67e-01 | 81.4% | 92.4% |
| 2o62A01 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.57 | 46.0 | 4.89e-01 | 86.2% | 95.4% |
| 2kr0A01 | 2.30.29.70 | Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 | 0.56 | 37.0 | 4.15e-01 | 86.9% | 85.8% |
| 1qj8A00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.55 | 42.0 | 4.26e-01 | 81.4% | 97.3% |
| 3u12A00 | 2.30.29.180 | Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain | 0.55 | 34.0 | 3.93e-01 | 83.4% | 86.5% |
| 2zf3C00 | 2.50.20.30 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › | 0.52 | 40.0 | 3.72e-01 | 81.4% | 90.1% |
| 3ga2A00 | 3.30.2170.10 | Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily | 0.51 | 42.0 | 3.64e-01 | 91.0% | 73.3% |
| 1gydB00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.51 | 42.0 | 3.33e-01 | 90.3% | 94.0% |
| 6f1uK02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.50 | 37.0 | 3.76e-01 | 77.2% | 83.4% |
| 2d9xA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.50 | 31.0 | 3.51e-01 | 88.3% | 80.9% |
ECOD (47)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3386946 | 9.1.1.11 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_2 | 0.92 | 85.0 | 8.40e-01 | 100.0% | 91.9% |
| 842 | 9.1.1.11 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_2 | 0.91 | 82.0 | 7.79e-01 | 100.0% | 81.4% |
| 3973757 | 9.1.1.11 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_2 | 0.90 | 86.0 | 8.27e-01 | 100.0% | 89.4% |
| 3286878 | 9.1.1.11 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_2 | 0.89 | 84.0 | 7.92e-01 | 100.0% | 85.1% |
| 4022437 | 9.1.1.11 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_2 | 0.89 | 82.0 | 7.79e-01 | 100.0% | 84.2% |
| 4804226 | 9.1.1.11 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_2 | 0.87 | 38.0 | 5.70e-01 | 88.3% | 91.2% |
| 4875038 | 9.1.1.11 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_2 | 0.86 | 81.0 | 8.03e-01 | 98.6% | 94.0% |
| 841 | 9.1.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin | 0.84 | 78.0 | 7.27e-01 | 100.0% | 81.0% |
| 3875866 | 9.1.1.11 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_2 | 0.84 | 78.0 | 7.34e-01 | 100.0% | 82.9% |
| 3626756 | 9.1.1.48 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_10 | 0.84 | 80.0 | 6.96e-01 | 100.0% | 77.6% |
| 3224530 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.84 | 80.0 | 7.03e-01 | 100.0% | 78.5% |
| 169663 | 9.1.1.11 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_2 | 0.83 | 73.0 | 7.11e-01 | 100.0% | 85.4% |
| 4100001 | 9.1.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin | 0.83 | 79.0 | 7.20e-01 | 100.0% | 79.2% |
| 3797694 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.82 | 79.0 | 7.22e-01 | 100.0% | 86.1% |
| None | — | 0.82 | 78.0 | 7.04e-01 | 100.0% | 83.7% | |
| 4021092 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.82 | 78.0 | 6.83e-01 | 100.0% | 81.0% |
| 3455003 | 9.1.1.11 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_2 | 0.82 | 78.0 | 6.89e-01 | 100.0% | 79.9% |
| 1807154 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.81 | 70.0 | 6.97e-01 | 100.0% | 87.8% |
| 136368 | 9.1.1.18 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › ApoM | 0.79 | 71.0 | 6.68e-01 | 100.0% | 80.0% |
| 4530660 | 9.1.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin | 0.79 | 68.0 | 6.83e-01 | 100.0% | 90.3% |
| 4003224 | 9.1.1.48 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_10 | 0.78 | 74.0 | 6.84e-01 | 100.0% | 82.2% |
| 3894256 | 9.1.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin | 0.78 | 70.0 | 6.71e-01 | 100.0% | 83.6% |
| 3407011 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.78 | 73.0 | 6.91e-01 | 100.0% | 85.9% |
| 3445177 | 9.1.1.10 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › VDE | 0.77 | 73.0 | 6.56e-01 | 100.0% | 81.6% |
| 3897308 | 9.1.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin | 0.76 | 71.0 | 6.77e-01 | 100.0% | 87.8% |
| 3747656 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.75 | 67.0 | 6.69e-01 | 100.0% | 92.0% |
| 3763936 | 9.1.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin | 0.74 | 67.0 | 6.45e-01 | 100.0% | 86.9% |
| 3371113 | 9.23.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 | 0.74 | 59.0 | 5.39e-01 | 82.1% | 67.2% |
| 3748074 | 9.1.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin | 0.72 | 65.0 | 6.33e-01 | 100.0% | 87.5% |
| 3218203 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.72 | 64.0 | 6.31e-01 | 100.0% | 89.7% |
| 3946522 | 9.1.1.36 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF3833 | 0.64 | 50.0 | 4.92e-01 | 81.4% | 91.6% |
| 3647716 | 9.1.1.12 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › THAP4_heme-bd | 0.63 | 49.0 | 4.75e-01 | 81.4% | 95.6% |
| 3937047 | 9.1.1.55 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF7045 | 0.62 | 48.0 | 5.23e-01 | 81.4% | 96.7% |
| 4942135 | 9.2.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin | 0.59 | 46.0 | 4.89e-01 | 81.4% | 100.0% |
| 3318685 | 284.1.3.2 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › OSR1_C | 0.58 | 33.0 | 3.87e-01 | 80.0% | 78.1% |
| 4556083 | 9.2.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › Avidin | 0.58 | 46.0 | 4.82e-01 | 82.8% | 94.6% |
| 4955671 | 7089.1.1.0 ↗ | a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD | 0.56 | 30.0 | 3.90e-01 | 97.2% | 93.8% |
| 3924939 | 4210.1.1.1 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain › WGR | 0.55 | 36.0 | 3.95e-01 | 100.0% | 80.9% |
| 4107647 | 243.18.1.1 ↗ | a+b two layers › Cystatin-like › Maltokinase N-terminal domain › Maltokinase N-terminal domain › Mak_N_cap | 0.55 | 33.0 | 4.03e-01 | 71.0% | 90.5% |
| None | — | 0.55 | 42.0 | 4.26e-01 | 81.4% | 97.3% | |
| 3933455 | 3369.1.1.1 ↗ | beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › Lamp2-like_luminal | 0.52 | 44.0 | 4.15e-01 | 93.8% | 96.2% |
| 3698019 | 11.8.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Osmotin-like › Osmotin-like | 0.51 | 34.0 | 3.40e-01 | 99.3% | 65.5% |
| 3593811 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.51 | 39.0 | 4.17e-01 | 79.3% | 94.4% |
| 3874175 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.51 | 32.0 | 3.42e-01 | 88.3% | 72.0% |
| 3552888 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.50 | 30.0 | 3.31e-01 | 85.5% | 70.8% |
| 3828371 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.50 | 26.0 | 3.18e-01 | 89.7% | 80.0% |
| 4466411 | 4051.1.1.2 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A | 0.50 | 37.0 | 3.50e-01 | 77.2% | 72.0% |