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Lipocalin_domain_containing_protein

Euk-Vir

Pandoravirus_neocaledonia

Lipocalin_domain_containing_protein__YP_009482488__Pandoravirus_neocaledonia__2107708

Identity

Accession:
YP_009482488 ↗
Protein ID:
Lipocalin_domain_containing_protein
Kingdom:
euk

Quality

73.7 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_neocaledonia

TaxID: 2107708

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 49-142
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08212.19 best Lipocalin_2 48.4 1.40e-12 98.9% 63.0%
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gkaB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.86 76.0 6.05e-01 100.0% 50.6%
2cm4A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.80 66.0 5.63e-01 100.0% 56.6%
1aqbA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.77 71.0 5.71e-01 100.0% 54.3%
1dfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.76 70.0 5.58e-01 100.0% 53.2%
1epaA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.76 65.0 5.43e-01 100.0% 55.0%
3qkgA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.74 67.0 5.47e-01 100.0% 55.5%
3apuB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.73 65.0 5.29e-01 100.0% 53.5%
1nqnA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.71 57.0 5.26e-01 100.0% 67.8%
4xmeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.70 64.0 5.09e-01 100.0% 54.9%
4hrzB00 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.70 48.0 4.40e-01 71.3% 56.9%
2cc3A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.68 53.0 4.60e-01 83.0% 93.1%
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.67 42.0 5.10e-01 70.2% 100.0%
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.67 44.0 5.19e-01 71.3% 100.0%
5aigA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 53.0 4.86e-01 88.3% 98.4%
3ebtA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 50.0 4.57e-01 85.1% 93.1%
2jq5A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 49.0 4.48e-01 83.0% 80.5%
4kz1A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.64 48.0 4.35e-01 81.9% 99.3%
3v8uA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.64 56.0 4.61e-01 100.0% 83.8%
3lygA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 52.0 4.79e-01 89.4% 97.5%
3cnxA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 48.0 4.27e-01 81.9% 95.7%
1lshA01 2.30.230.10 Mainly Beta › Roll › Lipovitellin-phosvitin complex; beta-sheet shell regions › Lipovitellin; beta-sheet shell regions, chain A 0.63 54.0 3.98e-01 96.8% 75.7%
1l7aA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.62 47.0 3.25e-01 79.8% 45.3%
3uaqB02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.62 53.0 4.46e-01 95.7% 87.7%
3kztA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 46.0 4.20e-01 81.9% 91.7%
3er7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 47.0 4.38e-01 84.0% 95.1%
5ay6A01 2.60.98.20 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Flagellar hook protein FlgE 0.60 54.0 4.42e-01 98.9% 94.2%
2c4iA01 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.60 49.0 4.58e-01 95.7% 72.9%
1uliB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 48.0 4.02e-01 91.5% 94.4%
3fo5B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 52.0 3.95e-01 100.0% 61.8%
1gydB00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 45.0 3.20e-01 84.0% 36.5%
3rd6A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 53.0 4.58e-01 100.0% 85.4%
7x7zA01 2.40.480.10 Mainly Beta › Beta Barrel › AOC barrel-like › Allene oxide cyclase-like 0.58 50.0 4.46e-01 96.8% 79.1%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.58 45.0 3.73e-01 100.0% 47.0%
3qszA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 49.0 4.14e-01 100.0% 80.2%
2pcsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 49.0 4.32e-01 100.0% 85.5%
2x8fA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 48.0 3.33e-01 92.6% 31.1%
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.57 36.0 3.81e-01 71.3% 71.4%
8fkmA01 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.57 45.0 3.75e-01 85.1% 64.0%
6obtA00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.57 48.0 3.51e-01 93.6% 76.9%
2xklA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 49.0 4.24e-01 98.9% 68.5%
4hgzA02 2.20.25.570 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.56 35.0 4.13e-01 98.9% 100.0%
1p32B00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.55 49.0 4.00e-01 97.9% 69.0%
7btxA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.55 48.0 3.31e-01 98.9% 48.2%
3bnvD00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 45.0 3.95e-01 91.5% 86.7%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.54 45.0 3.98e-01 91.5% 62.6%
4h5bA00 3.30.1460.70 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.53 39.0 3.36e-01 77.7% 55.9%
1zt4C01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.53 45.0 3.67e-01 93.6% 87.7%
3sy9C01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.53 44.0 2.99e-01 91.5% 30.9%
1pu4A03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.51 44.0 2.94e-01 96.8% 40.3%
3wa2X01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 39.0 4.00e-01 83.0% 92.0%
1zo0A00 3.40.630.60 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › 0.51 40.0 3.64e-01 85.1% 99.2%
3jvgA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.51 42.0 3.55e-01 95.7% 94.8%
2o62A01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 45.0 4.07e-01 100.0% 74.0%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4021092 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.81 76.0 5.71e-01 100.0% 46.8%
3445177 9.1.1.10 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › VDE 0.80 74.0 5.79e-01 100.0% 53.7%
3626756 9.1.1.48 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_10 0.79 73.0 5.56e-01 100.0% 45.4%
3224530 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.79 73.0 5.57e-01 100.0% 46.5%
3797694 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.79 72.0 5.69e-01 100.0% 51.1%
3997170 9.1.1.48 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_10 0.79 72.0 5.64e-01 100.0% 49.7%
3241736 9.1.1.48 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_10 0.78 71.0 5.48e-01 100.0% 46.7%
3455003 9.1.1.11 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_2 0.77 72.0 5.51e-01 100.0% 56.3%
None — 0.77 71.0 5.56e-01 100.0% 58.9%
3371113 9.23.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 0.77 72.0 5.69e-01 100.0% 57.2%
136368 9.1.1.18 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › ApoM 0.73 68.0 5.48e-01 100.0% 56.5%
3287191 243.1.1.71 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF8176 0.73 53.0 4.89e-01 76.6% 93.3%
3218203 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.72 66.0 5.55e-01 100.0% 83.2%
4464658 274.1.1.59 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGG 0.70 46.0 4.31e-01 84.0% 55.3%
3950922 243.1.1.80 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26580 0.67 52.0 4.85e-01 85.1% 100.0%
3184285 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.66 59.0 4.58e-01 100.0% 84.4%
3286836 243.1.1.80 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26580 0.66 53.0 5.01e-01 88.3% 100.0%
3647716 9.1.1.12 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › THAP4_heme-bd 0.64 57.0 4.78e-01 98.9% 78.1%
None — 0.63 54.0 4.25e-01 97.9% 93.4%
3937047 9.1.1.55 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF7045 0.63 53.0 4.95e-01 93.6% 95.0%
4202176 220.1.1.123 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SSH1-like_1st 0.63 50.0 3.98e-01 86.2% 89.5%
3254303 222.1.1.0 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.62 44.0 3.49e-01 73.4% 80.5%
3260630 222.1.1.12 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.62 44.0 3.53e-01 73.4% 80.6%
4112326 883.1.1.19 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › PF26544 0.62 53.0 4.12e-01 97.9% 98.2%
4613500 5.1.2.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_43 0.61 47.0 3.23e-01 83.0% 38.9%
4019099 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.61 46.0 4.16e-01 83.0% 84.4%
4944961 4121.1.1.19 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › PF27230 0.61 54.0 3.63e-01 100.0% 35.1%
3958160 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.60 46.0 4.31e-01 83.0% 86.7%
3230461 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.60 46.0 4.11e-01 81.9% 80.7%
4955671 7089.1.1.0 ↗ a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.59 40.0 4.31e-01 86.2% 82.5%
3266025 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.58 51.0 3.75e-01 100.0% 53.3%
3952896 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.58 43.0 4.00e-01 79.8% 91.1%
3349878 844.1.1.2 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.57 45.0 3.65e-01 86.2% 77.2%
4466411 4051.1.1.2 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.57 47.0 3.84e-01 90.4% 65.7%
4945243 325.1.6.4 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › PS_Dcarbxylase 0.57 40.0 3.42e-01 74.5% 93.1%
3281179 3692.1.1.1 ↗ a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall 0.56 40.0 3.56e-01 73.4% 68.1%
5064859 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.56 39.0 2.97e-01 74.5% 38.7%
4107647 243.18.1.1 ↗ a+b two layers › Cystatin-like › Maltokinase N-terminal domain › Maltokinase N-terminal domain › Mak_N_cap 0.56 43.0 4.29e-01 93.6% 82.1%
3179848 241.15.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N 0.55 45.0 4.06e-01 91.5% 89.9%
4088781 12.3.1.6 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N 0.55 48.0 3.92e-01 97.9% 73.3%
3508100 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.55 44.0 3.92e-01 89.4% 90.0%
185414 3347.1.1.1 ↗ beta meanders › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › DUF3836 0.54 45.0 3.99e-01 91.5% 63.0%
3728893 206.1.1.55 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › EcKL 0.54 45.0 3.08e-01 94.7% 28.9%
3212636 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.53 44.0 2.73e-01 92.6% 17.2%
4013403 222.1.1.0 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.53 44.0 3.61e-01 92.6% 81.7%
3989865 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.53 46.0 3.39e-01 94.7% 40.7%
4030677 1116.1.1.0 ↗ a+b two layers › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin-mucolipin domain 0.52 40.0 3.44e-01 81.9% 76.0%
4593266 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.52 36.0 3.92e-01 74.5% 89.3%
5009292 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.51 46.0 3.34e-01 98.9% 37.5%
D2 medium residues 143-194
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08212.19 best Lipocalin_2 31.0 3.10e-07 100.0% 34.2%
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1qwdB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.87 77.0 5.32e-01 100.0% 31.3%
1zs8A01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.65 47.0 3.36e-01 78.8% 42.1%
4lvnP00 3.30.70.2380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 53.0 4.61e-01 100.0% 60.5%
3llcA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.63 53.0 3.46e-01 98.1% 39.1%
4osnA00 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.62 42.0 3.39e-01 71.2% 80.9%
5ck3C00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.62 44.0 3.55e-01 76.9% 71.4%
4ar9A01 3.40.30.160 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Collagenase ColT, N-terminal domain 0.61 47.0 3.44e-01 84.6% 32.4%
1pc6A00 1.10.3790.10 Mainly Alpha › Orthogonal Bundle › NinB fold › NinB 0.60 42.0 3.12e-01 75.0% 54.6%
4d10F01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.60 47.0 3.36e-01 92.3% 67.0%
5tnvA00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.60 51.0 3.20e-01 100.0% 46.7%
1l1lA01 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.59 50.0 2.96e-01 100.0% 22.7%
4s1hA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.59 47.0 3.00e-01 90.4% 21.6%
2pe4A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.59 49.0 2.95e-01 100.0% 39.8%
3k85A00 3.30.230.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.59 44.0 2.74e-01 80.8% 83.3%
4zgfA00 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.58 42.0 3.25e-01 82.7% 73.0%
2dulA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 49.0 3.09e-01 100.0% 33.1%
4arvA02 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.57 40.0 3.17e-01 76.9% 87.3%
2ebnA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.57 46.0 3.05e-01 100.0% 52.3%
7uqyB01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.57 39.0 2.66e-01 73.1% 26.6%
1ciaA00 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.57 41.0 2.85e-01 82.7% 72.8%
1reoA01 3.90.660.10 Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › 0.57 46.0 3.31e-01 100.0% 40.0%
2bm0A03 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.56 46.0 4.63e-01 100.0% 94.1%
4mtlA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 48.0 3.23e-01 98.1% 40.9%
1e3hA03 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.55 47.0 3.16e-01 100.0% 80.8%
7sk7A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.54 41.0 2.65e-01 84.6% 44.7%
7essA01 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.54 44.0 3.44e-01 100.0% 62.1%
1neiA00 3.30.160.220 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YoaG 0.54 37.0 3.58e-01 73.1% 71.7%
3djcB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 43.0 3.73e-01 94.2% 77.3%
3buxB03 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.52 36.0 3.13e-01 78.8% 43.0%
2kt2A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 40.0 3.78e-01 100.0% 68.1%
3g2bA00 1.10.10.1150 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) 0.52 40.0 3.40e-01 84.6% 54.4%
2ethA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 43.0 3.28e-01 98.1% 42.6%
1vx7X00 3.30.1360.210 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.52 43.0 3.67e-01 100.0% 66.0%
4djhA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.52 39.0 2.52e-01 84.6% 44.6%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.52 42.0 3.80e-01 94.2% 65.8%
3pvlA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 38.0 3.21e-01 90.4% 44.8%
5eyaF00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.51 39.0 3.46e-01 82.7% 96.1%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3973757 9.1.1.11 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_2 0.91 83.0 5.71e-01 100.0% 32.5%
4804226 9.1.1.11 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_2 0.87 77.0 7.09e-01 100.0% 76.5%
4982318 3501.1.1.1 ↗ a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.70 49.0 4.71e-01 84.6% 65.0%
4279487 304.24.1.1 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.69 44.0 3.51e-01 76.9% 31.4%
2389835 312.1.1.1 ↗ a+b three layers › HIT-like › HIT-related › HIT-related › GalP_UDP_transf 0.68 55.0 3.91e-01 94.2% 50.3%
3770448 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.67 55.0 3.99e-01 100.0% 35.9%
2323836 304.24.1.1 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.67 42.0 3.36e-01 76.9% 30.0%
3593362 1021.1.1.0 ↗ a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.66 38.0 3.24e-01 84.6% 34.1%
4183868 878.1.1.1 ↗ a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.64 48.0 4.28e-01 84.6% 69.6%
3688824 318.1.1.0 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 0.63 47.0 3.99e-01 84.6% 78.9%
4303957 2006.1.6.15 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF58 0.62 48.0 3.47e-01 86.5% 71.6%
3958774 2006.1.6.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.61 48.0 3.06e-01 86.5% 39.9%
4887702 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.61 45.0 3.78e-01 84.6% 77.5%
3595729 245.1.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.61 45.0 4.00e-01 82.7% 82.5%
5029726 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.61 49.0 4.52e-01 100.0% 69.3%
4046039 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.60 44.0 3.90e-01 84.6% 68.2%
7698 829.1.1.1 ↗ a+b duplicates or obligate multimers › NinB › NinB › NinB › NinB 0.60 42.0 3.12e-01 75.0% 54.6%
3735908 109.4.1.1588 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27584, PF27595, PF30849 0.59 50.0 2.68e-01 100.0% 42.8%
3682205 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 41.0 3.15e-01 78.8% 28.3%
5076912 304.4.1.3 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › YCII 0.58 47.0 4.31e-01 100.0% 73.3%
3448591 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.58 46.0 4.66e-01 100.0% 98.0%
1552185 9.1.1.26 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF4847 0.58 42.0 3.20e-01 82.7% 72.3%
None — 0.57 46.0 3.15e-01 86.5% 77.8%
4959769 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.56 46.0 3.92e-01 98.1% 88.4%
3767943 304.6.1.1 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C 0.56 42.0 2.93e-01 84.6% 31.3%
3515089 304.3.1.1 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA 0.55 44.0 4.15e-01 100.0% 73.5%
3680215 109.4.1.880 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › LTN1_E3_ligase_6th 0.54 47.0 2.65e-01 100.0% 27.2%
3249245 5000.4.1.0 ↗ alpha arrays › Toxins' membrane translocation domains › delta-Endotoxin (insectocide), N-terminal domain › delta-Endotoxin (insectocide), N-terminal domain 0.54 45.0 2.96e-01 98.1% 64.7%
4048312 4272.1.1.1 ↗ a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.54 44.0 3.08e-01 100.0% 27.5%
3954346 2006.1.6.15 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF58 0.53 47.0 2.95e-01 100.0% 37.3%
3615104 245.1.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.53 38.0 3.35e-01 84.6% 68.4%
3746945 5051.1.1.1 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › SNF 0.53 43.0 2.45e-01 92.3% 62.5%
3940665 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.53 41.0 2.71e-01 86.5% 47.9%
3289468 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.53 42.0 3.95e-01 100.0% 92.9%
5024386 2484.4.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Nitrogenase accessory factor-like › Nitrogenase accessory factor-like 0.53 43.0 3.49e-01 90.4% 97.0%
3404964 221.13.1.0 ↗ a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain 0.53 37.0 3.07e-01 80.8% 81.7%
None — 0.52 37.0 2.36e-01 75.0% 23.0%
3333592 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 43.0 2.94e-01 96.2% 31.7%
4451287 3227.1.1.1 ↗ alpha complex topology › phosphorylation-coupled saccharide transporter ChbC › phosphorylation-coupled saccharide transporter ChbC › phosphorylation-coupled saccharide transporter ChbC › PTS_EIIC 0.52 39.0 2.40e-01 84.6% 17.4%
3984313 3227.1.1.0 ↗ alpha complex topology › phosphorylation-coupled saccharide transporter ChbC › phosphorylation-coupled saccharide transporter ChbC › phosphorylation-coupled saccharide transporter ChbC 0.52 42.0 2.66e-01 100.0% 37.1%
4861745 305.1.1.0 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase 0.51 36.0 3.47e-01 78.8% 72.6%
3590878 7569.1.1.1 ↗ a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › UDG 0.50 39.0 2.80e-01 98.1% 60.0%