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M37159.1__AAA21710.1__X__00005

Bact-Vir

M37159.1__AAA21710.1__X__00005

Identity

Accession:
M37159 ↗
Kingdom:
phage

Quality

83.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-38
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09198.17 best T4-Gluco-transf 75.2 7.50e-21 100.0% 22.9%
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3cnlA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.84 63.0 4.19e-01 100.0% 22.5%
3vpbA01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.83 59.0 4.29e-01 100.0% 28.7%
5dn8A02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.74 55.0 3.63e-01 100.0% 19.6%
2ajrA01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.72 57.0 3.37e-01 100.0% 12.5%
3s6pG00 6.10.140.1660 Special › Helix non-globular › Helix Hairpins › 0.71 55.0 4.62e-01 92.1% 68.1%
4bxoA01 3.40.50.10130 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.70 52.0 3.53e-01 100.0% 22.2%
1nrwA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.70 59.0 3.91e-01 100.0% 24.0%
3imkA00 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.68 49.0 3.31e-01 100.0% 19.0%
4rkrD02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.67 56.0 3.83e-01 100.0% 27.1%
6uqjA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.67 54.0 3.19e-01 100.0% 21.4%
3i6vA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.66 52.0 3.68e-01 97.4% 31.3%
3h7mA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.65 52.0 3.71e-01 100.0% 32.1%
2gmwA00 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.65 53.0 3.51e-01 100.0% 24.7%
4htyA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.65 54.0 3.19e-01 100.0% 11.8%
3kc2A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.65 51.0 3.47e-01 100.0% 22.0%
3eyeA00 3.40.35.10 Alpha Beta › 3-Layer(aba) Sandwich › Fructose Permease › Phosphotransferase system, sorbose subfamily IIB component 0.64 53.0 3.62e-01 100.0% 27.5%
3s6jA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.64 50.0 3.46e-01 100.0% 23.8%
4la9A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.63 48.0 3.56e-01 100.0% 33.1%
4g56A01 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.61 49.0 3.05e-01 100.0% 14.0%
2ac2A01 3.40.50.1400 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.61 47.0 3.22e-01 100.0% 22.3%
2x4dA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.60 46.0 3.23e-01 100.0% 24.8%
3delB01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.60 52.0 3.53e-01 97.4% 71.2%
1zatA01 3.10.20.800 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.60 45.0 3.36e-01 97.4% 71.2%
3n6xA02 3.40.50.11290 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 41.0 3.18e-01 100.0% 28.3%
3l0aA00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.59 45.0 2.87e-01 100.0% 21.1%
6zhhA01 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.59 51.0 3.32e-01 100.0% 82.8%
3k4uE01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.59 48.0 3.42e-01 100.0% 31.9%
4f3sA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.58 43.0 3.26e-01 100.0% 32.6%
3lkdA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 47.0 2.90e-01 97.4% 21.3%
3r4iA02 6.10.140.960 Special › Helix non-globular › Helix Hairpins › 0.58 41.0 3.55e-01 76.3% 60.0%
1xknA00 3.75.10.10 Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A 0.58 46.0 2.72e-01 100.0% 10.5%
3mpkA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.58 44.0 3.20e-01 100.0% 31.4%
2m8cA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.56 47.0 3.28e-01 94.7% 69.3%
3pdwA02 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.56 49.0 3.67e-01 100.0% 59.4%
3t7yA00 3.40.1690.10 Alpha Beta › 3-Layer(aba) Sandwich › name from scop › secretion proteins EscU 0.55 47.0 3.59e-01 100.0% 53.2%
4jdpA02 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.55 47.0 3.55e-01 100.0% 59.2%
2v5gA00 3.40.1690.10 Alpha Beta › 3-Layer(aba) Sandwich › name from scop › secretion proteins EscU 0.55 46.0 3.28e-01 100.0% 41.7%
2r2dA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.55 46.0 2.81e-01 100.0% 18.1%
1nktA02 3.90.1440.10 Alpha Beta › Alpha-Beta Complex › Pre-protein croslinking domain of SecA › SecA, preprotein cross-linking domain 0.55 46.0 3.31e-01 97.4% 47.5%
1iv0A00 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.54 46.0 3.48e-01 100.0% 90.8%
4r2qA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.53 38.0 2.95e-01 76.3% 64.8%
5lqdD01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.53 44.0 2.80e-01 100.0% 56.7%
4hltA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 40.0 2.72e-01 92.1% 73.6%
2ljuA01 3.30.160.190 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › atu1810 like domain 0.52 40.0 3.45e-01 100.0% 97.3%
1rifA01 3.30.780.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › 0.51 42.0 3.33e-01 100.0% 88.9%
4yk8B00 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.51 40.0 2.68e-01 100.0% 32.0%
3fxqB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 37.0 3.11e-01 94.7% 80.0%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4027159 2008.1.1.86 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAP 0.85 73.0 5.21e-01 100.0% 34.8%
3399114 2008.1.1.80 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › FAST_2 0.84 72.0 5.01e-01 100.0% 46.4%
4026332 2008.1.1.86 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAP 0.82 71.0 4.93e-01 100.0% 34.4%
4025795 2008.1.1.86 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAP 0.79 66.0 4.65e-01 100.0% 32.3%
4024691 2008.1.1.86 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAP 0.77 67.0 4.95e-01 100.0% 40.0%
None 0.77 63.0 3.79e-01 100.0% 20.9%
3414426 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.76 55.0 3.38e-01 100.0% 13.3%
4928698 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 56.0 4.48e-01 86.8% 83.7%
5062469 7531.1.1.1 a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase 0.73 62.0 3.75e-01 100.0% 15.1%
4106786 2007.15.1.8 a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase › CAP12-PCTIR_TIR 0.72 60.0 4.07e-01 100.0% 30.0%
3643738 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.72 62.0 3.93e-01 100.0% 32.6%
3743318 2006.1.1.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.71 60.0 3.81e-01 100.0% 19.0%
3644046 4120.1.1.0 few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP 0.70 51.0 4.46e-01 84.2% 52.3%
3223347 2002.1.1.106 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › GDPD 0.70 47.0 2.79e-01 100.0% 9.0%
3960263 2007.1.20.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Dehydratase-like › ILVD_EDD 0.70 61.0 4.00e-01 100.0% 24.1%
3992132 2006.1.1.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.70 57.0 3.53e-01 100.0% 16.1%
4418041 2006.1.1.11 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase_3 0.70 60.0 3.59e-01 100.0% 13.8%
4659593 2484.1.1.40 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.70 58.0 4.01e-01 100.0% 30.2%
5077381 2006.1.1.15 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase_like 0.69 60.0 3.94e-01 100.0% 24.4%
4948275 2007.1.3.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › B12-binding 0.69 58.0 4.08e-01 100.0% 32.3%
3290935 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.69 53.0 3.65e-01 100.0% 30.0%
3602678 2004.1.1.233 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Cas3-like_C_2 0.68 53.0 3.38e-01 86.8% 17.1%
3450582 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.68 58.0 4.07e-01 100.0% 47.7%
3925004 7585.1.1.1 a/b three-layered sandwiches › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Sec1 0.68 57.0 3.73e-01 100.0% 91.4%
3381077 2488.1.1.7 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › EMG1 0.67 56.0 3.90e-01 100.0% 49.3%
3583416 2006.1.4.9 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › RNase_Zc3h12a 0.66 57.0 3.84e-01 100.0% 28.3%
3901335 2002.1.1.63 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_35 0.66 58.0 3.30e-01 100.0% 11.1%
3959974 2007.5.1.23 a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › SGNH 0.65 53.0 3.48e-01 100.0% 20.0%
4014236 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.65 46.0 3.21e-01 76.3% 76.0%
4542132 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.65 56.0 3.64e-01 100.0% 63.4%
3487970 2006.1.4.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.65 55.0 3.65e-01 100.0% 26.5%
169395 7537.1.1.1 a/b three-layered sandwiches › PTS IIb component › PTS IIb component › PTS IIb component › PTSIIB_sorb 0.64 53.0 3.62e-01 100.0% 27.5%
3973337 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.64 50.0 3.63e-01 100.0% 34.4%
4288654 2008.1.1.7 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 0.61 53.0 3.57e-01 100.0% 27.6%
3551579 2006.1.1.16 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase_like,Hydrolase_6 0.61 46.0 3.25e-01 100.0% 24.2%
3963518 7546.1.1.1 a/b three-layered sandwiches › Glutaminase/Asparaginase N-terminal domain › Glutaminase/Asparaginase N-terminal domain › Glutaminase/Asparaginase N-terminal domain › Asparaginase 0.61 49.0 3.17e-01 100.0% 37.6%
5027627 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.59 44.0 3.95e-01 84.2% 54.5%
1520106 7523.1.1.4 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_3 0.59 44.0 3.69e-01 100.0% 47.8%
4179308 7523.1.1.4 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_3 0.59 46.0 2.92e-01 100.0% 16.8%
3908093 377.9.1.8 few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-FCS 0.59 42.0 3.99e-01 76.3% 82.2%
4968032 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.59 44.0 2.72e-01 100.0% 13.0%
3949014 7523.1.1.4 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_3 0.59 46.0 3.30e-01 100.0% 30.0%
4027433 4357.1.1.0 beta barrels › WWE domain › WWE domain › WWE domain 0.59 44.0 4.11e-01 84.2% 100.0%
5009731 304.139.1.2 a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs 0.58 43.0 2.74e-01 86.8% 78.8%
3528204 377.1.1.16 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-FCS 0.58 41.0 4.11e-01 76.3% 90.0%
4340663 7523.1.1.4 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_3 0.58 45.0 3.25e-01 100.0% 30.0%
3878133 375.1.1.265 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-FCS 0.57 40.0 4.02e-01 76.3% 90.0%
3711640 2006.1.1.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NIF 0.57 45.0 3.02e-01 100.0% 21.1%
4996461 3110.1.1.0 a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain 0.57 42.0 3.13e-01 100.0% 27.7%
3246385 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.57 46.0 3.08e-01 100.0% 24.7%
3394481 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.56 39.0 3.86e-01 73.7% 85.0%
3199995 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.54 43.0 3.58e-01 92.1% 62.9%
4263830 11.1.5.85 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › PFF1_C 0.53 40.0 2.73e-01 97.4% 91.8%
5060781 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.52 38.0 3.12e-01 89.5% 57.8%
3567496 2007.1.19.2 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin 0.52 44.0 2.66e-01 94.7% 86.0%
3740976 5081.1.1.4 alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › DUF1751 0.51 40.0 2.73e-01 100.0% 30.5%
3332131 5081.1.1.1 alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid 0.50 41.0 2.76e-01 97.4% 31.1%