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M59359.1__AAA72952.1__X__00001

Bact-Vir

M59359.1__AAA72952.1__X__00001

Identity

Accession:
M59359 ↗
Kingdom:
phage

Quality

65.1 mean pLDDT

Taxonomy

TaxID: 36342

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 153-227
PDB
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2v4jB03 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 44.0 4.75e-01 88.0% 81.5%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 57.0 5.14e-01 100.0% 77.7%
2mlgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 50.0 5.01e-01 89.3% 84.4%
2dqlA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 56.0 4.91e-01 100.0% 69.6%
2hoeA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 44.0 4.85e-01 88.0% 100.0%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 53.0 4.79e-01 100.0% 71.4%
5hvqC01 3.90.1150.220 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.61 48.0 4.76e-01 90.7% 95.0%
4kt5C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 49.0 4.73e-01 96.0% 79.5%
7ewfA01 1.25.40.990 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.59 50.0 3.63e-01 100.0% 31.6%
4nzrM03 3.30.110.180 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › 0.59 48.0 4.09e-01 89.3% 61.8%
5f7qC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 45.0 4.65e-01 86.7% 91.4%
2lrrA00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.59 44.0 4.50e-01 89.3% 85.7%
2ly1A01 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.58 47.0 4.69e-01 92.0% 89.9%
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 50.0 4.57e-01 100.0% 74.8%
5suvC00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.58 39.0 3.38e-01 70.7% 100.0%
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 45.0 4.01e-01 100.0% 56.7%
3c18A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 40.0 4.35e-01 84.0% 100.0%
2v1xA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 48.0 4.35e-01 100.0% 78.2%
3l9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 49.0 4.69e-01 100.0% 89.9%
1ka8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 43.0 4.02e-01 86.7% 81.0%
2eshA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 48.0 4.25e-01 100.0% 69.3%
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 48.0 4.36e-01 100.0% 73.3%
2vqcA00 1.10.10.1470 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › F-112 protein-like 0.56 43.0 4.46e-01 90.7% 92.9%
4g6qA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 43.0 4.15e-01 100.0% 75.9%
4ejoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 46.0 4.16e-01 100.0% 67.0%
3wkmB01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.54 31.0 2.87e-01 94.7% 43.6%
3gkuA03 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.54 40.0 4.09e-01 90.7% 84.5%
1zkkB00 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.54 48.0 3.76e-01 100.0% 68.3%
5vacA00 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.54 47.0 3.46e-01 100.0% 51.6%
2w5yA01 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.54 47.0 3.78e-01 100.0% 67.7%
2f1fA02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.54 33.0 3.35e-01 86.7% 60.3%
1vigA00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.54 37.0 3.84e-01 80.0% 77.5%
2anrA02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.54 37.0 3.74e-01 80.0% 73.3%
2zihC00 1.10.3630.10 Mainly Alpha › Orthogonal Bundle › yeast vps74-n-term truncation variant fold › yeast vps74-n-term truncation variant domain like 0.53 46.0 3.15e-01 100.0% 54.8%
3hnrA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 45.0 3.38e-01 97.3% 48.7%
4oo1I01 2.40.50.880 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 45.0 4.54e-01 94.7% 100.0%
5cm2Z00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 44.0 3.34e-01 94.7% 48.4%
3c0wA02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.52 44.0 4.07e-01 100.0% 80.6%
6l3tA01 1.20.1440.80 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Gap junction channel protein cysteine-rich domain 0.52 37.0 2.80e-01 76.0% 59.3%
3gz5B02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 40.0 4.09e-01 97.3% 90.5%
4ldgA00 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.51 44.0 3.26e-01 100.0% 52.3%
7qssA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.51 44.0 3.36e-01 100.0% 42.0%
2wpvE00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 43.0 2.99e-01 98.7% 33.9%
2pjdA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 38.0 3.14e-01 100.0% 41.7%
2bkyX00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.50 40.0 3.88e-01 89.3% 83.7%
1id0A00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.50 42.0 3.50e-01 98.7% 71.2%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5010592 101.1.2.68 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.70 54.0 4.65e-01 98.7% 52.5%
4025104 101.1.2.122 alpha arrays › HTH › HTH › winged helix domain › CSN8_PSD8_EIF3K 0.69 55.0 5.40e-01 98.7% 81.2%
3542800 101.1.2.312 alpha arrays › HTH › HTH › winged helix domain › MSC 0.68 59.0 4.04e-01 96.0% 31.0%
4983426 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 56.0 5.51e-01 100.0% 88.7%
4593646 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 54.0 5.12e-01 100.0% 75.6%
4950221 101.1.2.143 alpha arrays › HTH › HTH › winged helix domain › HTH_34 0.66 56.0 5.07e-01 100.0% 68.5%
5075830 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 51.0 4.52e-01 92.0% 58.2%
5076142 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 54.0 5.07e-01 100.0% 74.7%
4946524 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 55.0 4.89e-01 100.0% 65.5%
3995114 101.1.2.164 alpha arrays › HTH › HTH › winged helix domain › TFA2_Winged_2 0.65 50.0 4.46e-01 94.7% 57.3%
4122073 205.1.1.0 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin 0.65 43.0 4.84e-01 85.3% 92.7%
4997197 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 53.0 5.30e-01 98.7% 90.7%
3944118 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 55.0 5.22e-01 100.0% 81.1%
5071263 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 54.0 5.18e-01 100.0% 81.1%
4983310 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.64 56.0 5.11e-01 100.0% 75.0%
4956545 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 50.0 5.17e-01 93.3% 92.9%
5008107 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.63 48.0 4.36e-01 88.0% 60.0%
3566131 101.1.2.24 alpha arrays › HTH › HTH › winged helix domain › MAGE 0.63 54.0 3.87e-01 100.0% 32.5%
4186742 101.1.2.39 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA 0.63 50.0 5.22e-01 92.0% 94.3%
4947062 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 54.0 5.04e-01 100.0% 81.1%
5071269 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.62 55.0 4.01e-01 100.0% 39.0%
5044327 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 54.0 4.97e-01 100.0% 75.0%
5079768 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 52.0 5.03e-01 100.0% 84.5%
3574282 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.62 49.0 4.38e-01 96.0% 60.0%
3406884 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 54.0 3.79e-01 100.0% 34.8%
3657246 101.1.2.525 alpha arrays › HTH › HTH › winged helix domain › DUF7646 0.62 48.0 4.47e-01 97.3% 67.4%
4940261 101.1.2.54 alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R 0.61 47.0 4.89e-01 90.7% 91.4%
3685473 109.4.1.295 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COP9_hel_rpt 0.61 51.0 3.13e-01 93.3% 14.7%
4975584 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.61 48.0 4.93e-01 100.0% 94.3%
3988732 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.61 52.0 4.72e-01 100.0% 69.4%
3890162 101.1.2.526 alpha arrays › HTH › HTH › winged helix domain › PF27602 0.61 50.0 5.01e-01 96.0% 92.0%
4991088 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 48.0 4.75e-01 90.7% 82.5%
4978789 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 49.0 4.61e-01 92.0% 78.9%
3741612 101.1.2.90 alpha arrays › HTH › HTH › winged helix domain › HTH_9 0.60 50.0 4.79e-01 100.0% 78.9%
3989015 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 50.0 4.56e-01 97.3% 67.6%
4026870 101.1.2.111 alpha arrays › HTH › HTH › winged helix domain › RQC 0.60 52.0 4.65e-01 100.0% 86.4%
4981949 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 52.0 5.17e-01 100.0% 93.8%
4953964 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.60 51.0 4.59e-01 100.0% 76.4%
5000702 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 52.0 5.02e-01 100.0% 87.1%
3587554 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.60 51.0 4.73e-01 100.0% 75.0%
3987881 101.1.2.76 alpha arrays › HTH › HTH › winged helix domain › CtsR 0.60 48.0 4.85e-01 92.0% 89.3%
4229465 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 46.0 4.57e-01 93.3% 82.5%
3404309 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.59 50.0 3.02e-01 100.0% 15.8%
4964629 101.1.2.922 alpha arrays › HTH › HTH › winged helix domain › DUF7123 0.59 46.0 4.75e-01 94.7% 94.2%
4964272 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 47.0 4.29e-01 96.0% 64.8%
None 0.58 51.0 3.27e-01 100.0% 20.0%
5041315 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.58 50.0 4.61e-01 100.0% 79.0%
5064203 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 50.0 4.75e-01 100.0% 83.3%
4987112 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 47.0 4.06e-01 100.0% 54.6%
3644266 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 49.0 4.56e-01 100.0% 80.0%
4994432 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 50.0 4.55e-01 100.0% 72.4%
5017390 131.1.1.0 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like 0.57 44.0 2.79e-01 88.0% 14.4%
3785947 101.1.2.111 alpha arrays › HTH › HTH › winged helix domain › RQC 0.57 48.0 4.20e-01 100.0% 73.6%
3988118 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 46.0 4.49e-01 100.0% 82.4%
140410 101.1.2.137 alpha arrays › HTH › HTH › winged helix domain › OST-HTH 0.57 46.0 4.47e-01 93.3% 92.9%
5001098 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 49.0 4.66e-01 100.0% 86.7%
3240179 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 47.0 4.35e-01 100.0% 77.1%
4951019 101.1.2.896 alpha arrays › HTH › HTH › winged helix domain › DUF2551 0.55 47.0 4.42e-01 100.0% 80.0%
4128318 328.3.1.2 a+b two layers › IF3-like › Translation initiation factor IF3, C-terminal domain › Translation initiation factor IF3, C-terminal domain › mIF3 0.54 45.0 3.69e-01 93.3% 67.6%
3648333 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.54 45.0 4.19e-01 100.0% 73.0%
5011468 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.54 45.0 3.93e-01 98.7% 92.8%
1299892 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.53 46.0 4.05e-01 100.0% 71.9%
4555708 328.3.1.2 a+b two layers › IF3-like › Translation initiation factor IF3, C-terminal domain › Translation initiation factor IF3, C-terminal domain › mIF3 0.53 46.0 4.09e-01 98.7% 72.7%
4675260 328.3.1.2 a+b two layers › IF3-like › Translation initiation factor IF3, C-terminal domain › Translation initiation factor IF3, C-terminal domain › mIF3 0.52 46.0 3.98e-01 98.7% 72.2%
4946426 3241.1.1.0 alpha arrays › Golgi phosphoprotein 3 › Golgi phosphoprotein 3 › Golgi phosphoprotein 3 0.50 42.0 3.18e-01 100.0% 60.9%
5025326 2003.1.7.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › CoA_trans 0.50 43.0 2.98e-01 100.0% 43.8%
D2 medium residues 34-85
PDB
D3 medium residues 86-146
PDB