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MAG-_RNA-dependent_RNA_polymerase

Euk-Vir

Coniothyrium_diplodiella_chrysovirus_1

MAG-_RNA-dependent_RNA_polymerase__YP_010088049__Coniothyrium_diplodiella_chrysovirus_1__2587540

Identity

Accession:
YP_010088049 ↗
Protein ID:
MAG-_RNA-dependent_RNA_polymerase
Kingdom:
euk

Quality

81.9 mean pLDDT

Taxonomy

Orthornavirae› Duplornaviricota› Chrymotiviricetes› Ghabrivirales› Chrysoviridae› Betachrysovirus› Coniothyrium_diplodiella_chrysovirus_1

TaxID: 2587540

Cluster

View cluster (12 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 36-62_117-211
PDB
Domain cluster: rep: VP2__YP_009665170__Eriocheir_sinensis_reovirus__273810__D721-872
D2 medium residues 63-116
PDB
Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_010088028__Betachrysovirus_aspergilli__2164061__D60-117
D3 medium residues 259-455_575-607_793-830
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6byoA01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.56 22.0 3.10e-01 97.0% 73.3%
2e9fB01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.54 19.0 3.15e-01 76.1% 86.5%
8hk0B03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.52 22.0 3.06e-01 77.2% 75.4%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3932619 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.50 26.0 3.45e-01 78.7% 92.0%
D4 medium residues 456-500_608-627_666-733
PDB
Domain cluster: rep: ORF1__YP_009667018__Penicillium_janczewskii_chrysovirus_2__1755793__D600-624_667-729
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02123.22 best RdRP_4 29.6 4.90e-07 53.4% 13.6%
D5 medium residues 501-574_892-1001
PDB
Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_009553287__Alternaria_alternata_chrysovirus_1__2066695__D525-562_910-992
D6 medium residues 628-665_734-792
PDB
Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_009342440__Wuhan_insect_virus_18__1923722__D388-416_481-565_595-607
D7 medium residues 831-891
PDB
D8 medium residues 1002-1125
PDB
Domain cluster: rep: putative_RNA-dependent_RNA_polymerase__YP_009551629__Colletotrichum_fructicola_chrysovirus_1__2304034__D1009-1132