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MAG_RNA-dependent_RNA_polymerase

Euk-Vir

Neofusicoccum_parvum_chrysovirus_1

MAG_RNA-dependent_RNA_polymerase__YP_010088052__Neofusicoccum_parvum_chrysovirus_1__2587541

Identity

Accession:: YP_010088052 ↗
Protein ID:: MAG_RNA-dependent_RNA_polymerase
Kingdom:: euk

Quality

85.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 285-427

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_009553287__Alternaria_alternata_chrysovirus_1__2066695__D294-443_597-609

D2 medium residues 4-28_58-115

PDB

Domain cluster: representative

CATH (20)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
7vevA01	3.10.105.10	Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3	0.62	50.0	3.56e-01	88.0%	77.0%
3t46A00	1.20.1270.10	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.60	47.0	4.92e-01	96.4%	93.3%
2mmbA00	4.10.640.20	Few Secondary Structures › Irregular › 30s Ribosomal Protein S18 ›	0.59	43.0	3.93e-01	88.0%	58.9%
1aueB00	1.20.120.150	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › FKBP12-rapamycin binding domain	0.57	48.0	4.64e-01	90.4%	83.0%
4kjmB01	1.20.5.420	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C	0.57	41.0	4.61e-01	90.4%	100.0%
1xwjA01	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.57	48.0	4.10e-01	91.6%	83.8%
3bvxA02	1.20.1270.50	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain	0.56	51.0	4.62e-01	98.8%	79.3%
2ebfX02	1.20.140.180	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 ›	0.56	42.0	3.47e-01	95.2%	46.2%
2xqyA01	3.30.500.50	Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 ›	0.55	48.0	3.83e-01	100.0%	69.1%
4fm3A00	1.20.1270.390	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.55	43.0	4.21e-01	98.8%	77.9%
2pmrA00	1.20.1270.90	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like	0.54	44.0	4.63e-01	97.6%	98.7%
2oo2A00	1.20.1270.90	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like	0.54	44.0	4.56e-01	100.0%	98.7%
1sr2A00	1.20.120.160	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain	0.54	41.0	3.67e-01	88.0%	57.8%
4cc9B00	1.20.5.4730	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.54	43.0	4.11e-01	100.0%	73.5%
2o57A01	1.10.287.840	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mycolic acid cyclopropane synthase domain like	0.54	36.0	3.33e-01	72.3%	54.3%
4f5cA04	1.25.50.20	Mainly Alpha › Alpha Horseshoe › Zincin-like fold ›	0.53	37.0	2.48e-01	73.5%	28.3%
3u8vA00	1.20.120.660	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain	0.53	40.0	4.02e-01	88.0%	81.9%
3rlfG01	1.10.3720.10	Mainly Alpha › Orthogonal Bundle › MetI-like fold › MetI-like	0.52	43.0	3.06e-01	92.8%	91.9%
2wzvA01	3.40.109.10	Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase	0.52	36.0	2.68e-01	72.3%	86.7%
2di3B02	1.20.120.530	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like	0.51	43.0	3.53e-01	94.0%	82.6%

ECOD (40)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5066226	632.11.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like	0.65	48.0	5.37e-01	98.8%	100.0%
4942064	632.11.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like	0.64	48.0	5.33e-01	96.4%	100.0%
5028218	632.11.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like	0.61	45.0	4.97e-01	96.4%	98.5%
5061334	632.22.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats	0.61	47.0	4.84e-01	98.8%	87.5%
5061758	632.22.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats	0.60	46.0	4.83e-01	95.2%	90.7%
5068187	632.11.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like	0.59	44.0	4.58e-01	94.0%	87.8%
4034431	632.15.1.1 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) › CompInhib_SCIN	0.58	48.0	4.78e-01	96.4%	88.1%
5060144	632.22.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats	0.58	44.0	4.73e-01	98.8%	98.6%
4379165	5082.1.1.1 ↗	alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux	0.58	41.0	3.00e-01	73.5%	39.1%
5061320	632.11.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like	0.58	45.0	4.57e-01	98.8%	87.5%
5014266	632.11.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like	0.57	44.0	4.62e-01	97.6%	94.7%
4959131	632.11.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like	0.57	47.0	4.93e-01	100.0%	100.0%
5000174	601.16.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase	0.57	48.0	4.52e-01	94.0%	82.0%
3691308	632.11.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like	0.56	48.0	4.51e-01	98.8%	78.0%
3961486	5069.1.1.0 ↗	alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes	0.56	49.0	3.80e-01	95.2%	83.4%
4109796	632.18.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › hypothetical protein PA2901 › hypothetical protein PA2901	0.56	44.0	4.42e-01	95.2%	84.7%
5061321	632.11.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like	0.56	45.0	4.52e-01	97.6%	84.7%
4995204	632.11.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like	0.56	42.0	4.52e-01	91.6%	98.6%
4978581	3684.1.1.0 ↗	alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like	0.55	48.0	4.51e-01	95.2%	83.0%
3570202	601.4.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains	0.55	47.0	4.44e-01	94.0%	89.0%
5031855	632.15.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN)	0.55	46.0	4.73e-01	97.6%	97.5%
3950589	601.18.1.5 ↗	alpha bundles › Four-helical up-and-down bundle › Oxygen-evolving enhancer protein 3 › Oxygen-evolving enhancer protein 3 › DUF4395	0.55	45.0	4.27e-01	90.4%	79.0%
5044067	632.11.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like	0.54	46.0	4.50e-01	98.8%	86.7%
5059279	632.11.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like	0.54	43.0	4.36e-01	96.4%	88.7%
3972686	628.1.1.1 ↗	alpha bundles › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › FCD	0.54	45.0	3.77e-01	90.4%	94.3%
3972698	632.11.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like	0.54	41.0	4.13e-01	95.2%	81.2%
4959463	6155.1.1.2 ↗	alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop	0.54	40.0	4.09e-01	79.5%	90.0%
1141813	159.1.2.2 ↗	alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › MazG	0.53	39.0	3.75e-01	77.1%	77.7%
4959130	632.11.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like	0.53	41.0	4.41e-01	96.4%	100.0%
4942424	632.11.1.1 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like › DUF357	0.53	42.0	4.37e-01	98.8%	98.7%
5014073	632.11.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like	0.52	43.0	4.12e-01	92.8%	78.9%
4960234	5045.1.1.3 ↗	alpha bundles › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › V_ATPase_I	0.52	44.0	3.13e-01	97.6%	38.2%
4033427	639.2.1.0 ↗	alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR)	0.52	39.0	4.15e-01	79.5%	98.6%
4028105	6155.1.1.2 ↗	alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop	0.52	40.0	3.65e-01	85.5%	71.3%
3274773	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.51	39.0	2.86e-01	80.7%	42.7%
5030281	140.1.1.7 ↗	alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_2	0.51	45.0	3.81e-01	100.0%	62.8%
5028219	632.11.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like	0.51	43.0	4.25e-01	96.4%	86.7%
3431182	604.3.1.0 ↗	alpha bundles › Spectrin repeat-like › BAG domain › BAG domain	0.51	44.0	3.73e-01	98.8%	93.8%
5034164	632.11.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like	0.51	40.0	3.97e-01	91.6%	83.5%
4434114	3877.1.1.1 ↗	alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC › 60KD_IMP	0.50	37.0	2.99e-01	80.7%	84.9%

D3 medium residues 431-465_570-637_650-746

PDB

Domain cluster: rep: RNA-directed_RNA_polymerase__YP_009115492__Phomopsis_vexans_RNA_virus__1580605__D205-510

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02123.22 best	RdRP_4	39.8	3.90e-10	88.5%	32.3%

D4 medium residues 507-569_884-985

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_009553287__Alternaria_alternata_chrysovirus_1__2066695__D525-562_910-992

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4m70B00	1.10.246.200	Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › WPP domain	0.64	29.0	3.79e-01	84.2%	75.8%
4rngC00	1.20.1280.290	Mainly Alpha › Up-down Bundle › Monooxygenase ›	0.59	22.0	3.01e-01	77.0%	62.7%
3keyA01	1.10.10.1080	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain	0.54	27.0	3.60e-01	93.3%	89.7%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4629874	6130.1.1.1 ↗	alpha complex topology › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Se-cys_synth_N	0.53	23.0	3.09e-01	83.0%	77.5%