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ME53

Euk-Vir

Perigonia_lusca_single_nucleopolyhedrovirus

ME53__YP_009165609__Perigonia_lusca_single_nucleopolyhedrovirus__1675865

Identity

Accession:
YP_009165609 ↗
Protein ID:
ME53
Kingdom:
euk

Quality

79.3 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Perigonia_lusca_single_nucleopolyhedrovirus

TaxID: 1675865

Cluster

View cluster (44 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 34-165
PDB
Domain cluster: rep: me53_protein__YP_007250543__Thysanoplusia_orichalcea_nucleopolyhedrovirus__101850__D109-237
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06061.17 best Baculo_ME53 139.8 1.80e-40 100.0% 41.2%
D2 high residues 171-261
PDB
Domain cluster: rep: me-53__YP_009186707__Sucra_jujuba_nucleopolyhedrovirus__1563660__D191-238_262-289
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06061.17 best Baculo_ME53 52.0 9.10e-14 100.0% 29.7%
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3a27A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.68 46.0 3.38e-01 100.0% 28.8%
1rtzA00 3.30.70.560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK 0.66 44.0 3.70e-01 98.9% 41.4%
2dhxA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.62 36.0 3.90e-01 97.8% 68.0%
7jooC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 49.0 4.82e-01 89.0% 89.7%
4igbB02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 55.0 4.70e-01 100.0% 63.6%
3u83A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 49.0 4.65e-01 90.1% 88.1%
4melA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.59 45.0 4.48e-01 96.7% 80.9%
3uxfA02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 51.0 4.20e-01 100.0% 64.5%
7wguB01 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.57 41.0 4.14e-01 94.5% 75.8%
3q0hB00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 50.0 4.71e-01 94.5% 84.1%
3tp4B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 44.0 4.41e-01 95.6% 81.7%
1pgsA02 2.60.120.230 Mainly Beta › Sandwich › Jelly Rolls › 0.56 48.0 3.95e-01 97.8% 73.1%
3pdgA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 42.0 4.25e-01 93.4% 80.2%
3ks7A02 2.60.120.230 Mainly Beta › Sandwich › Jelly Rolls › 0.55 48.0 3.89e-01 97.8% 80.4%
3ramA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 42.0 3.83e-01 100.0% 62.7%
1v8hA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 48.0 4.54e-01 95.6% 89.6%
7t7zA01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.54 48.0 4.12e-01 100.0% 68.9%
5uj6A01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 47.0 3.98e-01 100.0% 57.2%
6grqA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 41.0 4.22e-01 91.2% 84.1%
1tg7A04 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 46.0 3.74e-01 98.9% 50.0%
4ei0A01 2.60.40.3550 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4466 0.53 45.0 3.94e-01 100.0% 61.0%
7pjjA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 44.0 3.98e-01 100.0% 65.1%
2gy5A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 40.0 4.08e-01 92.3% 82.2%
1jr7A00 3.60.130.10 Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like 0.53 44.0 3.22e-01 100.0% 61.1%
1ollA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 43.0 4.26e-01 97.8% 85.3%
1gmiA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.52 39.0 3.45e-01 79.1% 58.5%
5aa7A00 2.70.50.50 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › chitin-binding protein cbp21 0.52 45.0 3.91e-01 96.7% 66.2%
2wngA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 41.0 4.20e-01 95.6% 88.5%
4r9pA00 2.60.200.10 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.52 43.0 3.37e-01 94.5% 89.5%
2avwD01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 43.0 3.83e-01 96.7% 77.3%
6se8A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 42.0 4.02e-01 91.2% 87.0%
2oxgC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 45.0 4.41e-01 98.9% 89.1%
1va0B02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.50 44.0 3.99e-01 97.8% 78.2%
2b5iC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 41.0 4.06e-01 95.6% 85.4%
1c8nC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.50 43.0 3.36e-01 100.0% 66.7%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5045594 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.62 43.0 4.10e-01 86.8% 61.9%
3408444 11.1.1.3 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig 0.61 51.0 4.83e-01 91.2% 89.1%
3616434 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.61 53.0 3.98e-01 98.9% 55.0%
4350613 302.1.1.0 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain 0.61 53.0 5.05e-01 96.7% 99.0%
5040514 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.59 51.0 5.17e-01 95.6% 98.9%
3223718 11.10.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.58 52.0 4.66e-01 100.0% 94.6%
4488199 11.1.1.1249 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF27332 0.58 50.0 4.31e-01 95.6% 70.9%
3211509 11.10.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.58 52.0 4.62e-01 100.0% 94.6%
3424134 11.10.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.58 52.0 4.45e-01 100.0% 93.8%
3468176 11.10.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.58 51.0 4.31e-01 100.0% 93.5%
3446486 11.10.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.58 51.0 4.38e-01 100.0% 93.3%
4929428 304.162.1.0 ↗ a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain 0.58 36.0 3.75e-01 98.9% 67.1%
3225807 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.57 51.0 4.44e-01 97.8% 85.0%
3885350 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 48.0 4.69e-01 94.5% 82.0%
3641999 11.10.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.57 51.0 4.50e-01 100.0% 97.0%
3216475 11.10.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.57 51.0 4.57e-01 98.9% 99.2%
3220049 11.1.1.1023 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MATH 0.57 51.0 4.56e-01 100.0% 96.2%
3243813 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.56 48.0 4.40e-01 94.5% 99.2%
3837580 11.10.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.55 48.0 4.06e-01 97.8% 82.6%
3647799 302.4.1.0 ↗ a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.55 49.0 4.54e-01 100.0% 95.7%
5033364 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 47.0 3.91e-01 92.3% 69.5%
5054864 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 49.0 4.52e-01 98.9% 83.1%
5024539 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.55 49.0 4.28e-01 100.0% 66.7%
3481131 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 48.0 4.22e-01 100.0% 75.0%
3840244 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.54 45.0 4.37e-01 92.3% 83.8%
3748270 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 46.0 4.41e-01 95.6% 81.9%
None — 0.54 47.0 3.22e-01 100.0% 46.5%
4661931 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 46.0 3.95e-01 96.7% 74.7%
4308473 10.12.1.41 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › CsiD 0.53 45.0 3.23e-01 100.0% 59.1%
3546856 11.1.1.852 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28276 0.53 47.0 4.06e-01 98.9% 89.3%
3221247 11.10.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.52 44.0 4.02e-01 100.0% 96.3%
4023481 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.52 45.0 3.73e-01 94.5% 90.6%
3933156 11.1.1.835 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_Irg-7 0.52 45.0 4.20e-01 94.5% 82.6%
3453493 7.1.1.0 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain 0.52 45.0 4.01e-01 100.0% 89.6%
5013196 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 42.0 4.22e-01 95.6% 85.3%
4962193 302.4.1.1 ↗ a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C 0.51 43.0 4.21e-01 98.9% 100.0%
3056812 11.1.1.296 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Hanta_Gc_C 0.51 41.0 3.95e-01 95.6% 76.4%
3891360 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.50 45.0 4.25e-01 100.0% 98.2%
5080777 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.50 44.0 3.47e-01 100.0% 67.0%
4199516 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 43.0 4.11e-01 93.4% 83.8%
D3 high residues 280-355
PDB
Domain cluster: rep: ME53__YP_009182323__Diatraea_saccharalis_granulovirus__1675862__D239-309
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06061.17 best Baculo_ME53 75.3 7.40e-21 97.4% 21.5%