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ME53

Euk-Vir

Mythimna_unipuncta_granulovirus_B

ME53__YP_009345870__Mythimna_unipuncta_granulovirus_B__2169746

Identity

Accession:
YP_009345870 ↗
Protein ID:
ME53
Kingdom:
euk

Quality

71.6 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Betabaculovirus› Betabaculovirus_altermyunipunctae

TaxID: 2169746

Cluster

View cluster (44 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-107
PDB
Domain cluster: rep: me53_protein__YP_007250543__Thysanoplusia_orichalcea_nucleopolyhedrovirus__101850__D109-237
D2 high residues 122-211
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vdrB02 2.60.40.1510 Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 3 0.70 48.0 3.98e-01 100.0% 41.2%
1kshB00 2.70.50.40 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › GMP phosphodiesterase, delta subunit 0.68 43.0 3.63e-01 72.2% 40.1%
3vi3B02 2.60.40.1510 Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 3 0.67 47.0 4.04e-01 100.0% 45.8%
1l2mA00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.65 40.0 3.71e-01 100.0% 47.5%
2rjzA02 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.64 43.0 4.22e-01 100.0% 63.6%
3r0nA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 55.0 4.87e-01 95.6% 87.5%
1wyzA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.61 43.0 4.08e-01 98.9% 60.0%
3u83A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 52.0 4.87e-01 92.2% 87.2%
4gjtC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 53.0 4.88e-01 95.6% 89.3%
3ffyA00 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.60 54.0 5.00e-01 98.9% 84.8%
2qyxA02 3.30.70.1360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › mj0159-like 0.59 42.0 3.91e-01 77.8% 59.3%
2pndA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 52.0 4.72e-01 97.8% 84.0%
6fzvD01 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.58 46.0 4.23e-01 100.0% 66.1%
4bfiB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 50.0 4.68e-01 95.6% 84.8%
2f1xB00 2.60.210.10 Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 0.57 51.0 4.39e-01 100.0% 92.3%
1umhA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 51.0 4.01e-01 100.0% 59.2%
3bvxA05 2.60.40.1360 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 43.0 4.22e-01 100.0% 78.1%
2e4tA01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 42.0 3.84e-01 97.8% 61.2%
7jrjK01 3.30.70.141 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleoside diphosphate kinase-like domain 0.55 43.0 3.60e-01 100.0% 48.7%
1hkfA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 46.0 4.34e-01 92.2% 84.3%
3wa2X01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 34.0 3.49e-01 90.0% 64.4%
2bonA02 2.60.200.40 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.54 41.0 3.51e-01 82.2% 88.6%
1wscA01 3.30.700.20 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Hypothetical protein ph0010; domain 1 0.54 48.0 4.08e-01 100.0% 75.8%
3zn4A00 2.60.120.1180 Mainly Beta › Sandwich › Jelly Rolls › 0.54 47.0 4.05e-01 100.0% 76.5%
3f8uB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 47.0 4.23e-01 97.8% 90.5%
5awwY00 1.10.3370.10 Mainly Alpha › Orthogonal Bundle › Preprotein translocase SecY subunit › SecY subunit domain 0.54 39.0 2.59e-01 78.9% 96.9%
2df7A02 2.60.120.660 Mainly Beta › Sandwich › Jelly Rolls › icosahedral virus 0.54 48.0 4.16e-01 100.0% 73.6%
8dkuA02 2.70.50.60 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › abc- transporter (atp binding component) like domain 0.53 48.0 4.08e-01 100.0% 81.0%
5j09A00 2.60.120.950 Mainly Beta › Sandwich › Jelly Rolls › Circovirus capsid protein 0.53 48.0 3.88e-01 100.0% 95.9%
1s55A00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.53 46.0 3.92e-01 100.0% 76.9%
4jqrA00 2.60.120.1350 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF4465 0.52 46.0 3.50e-01 100.0% 54.1%
2dvkA00 3.30.1960.10 Alpha Beta › 2-Layer Sandwich › SSo0622-like fold › tRNA wybutosine-synthesizing-like 0.52 41.0 3.43e-01 87.8% 71.7%
3omlA03 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 39.0 2.88e-01 81.1% 100.0%
6a48A01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 46.0 3.93e-01 100.0% 63.7%
1ymmE01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 44.0 4.08e-01 97.8% 82.9%
1c8nC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.51 45.0 3.43e-01 100.0% 66.2%
2avwD01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 44.0 3.89e-01 100.0% 77.3%
2qqkA01 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.51 43.0 4.01e-01 95.6% 86.3%
3og6B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 40.0 3.96e-01 97.8% 80.8%
4zchA01 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.51 44.0 3.98e-01 100.0% 80.8%
4mxwD00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.50 44.0 3.88e-01 97.8% 79.3%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4871888 226.1.1.4 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 0.74 43.0 4.49e-01 100.0% 63.0%
3387365 872.8.1.0 ↗ a+b two layers › Dodecin subunit-like › Probable RNA-binding protein N-terminal domain › Probable RNA-binding protein N-terminal domain 0.66 40.0 4.57e-01 100.0% 83.1%
3791135 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.63 58.0 4.79e-01 100.0% 96.1%
5056886 219.1.1.51 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39_2 0.62 54.0 4.22e-01 100.0% 54.6%
4957047 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 54.0 4.49e-01 98.9% 100.0%
3928662 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.61 55.0 4.33e-01 100.0% 80.5%
3417210 304.126.1.1 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.60 41.0 4.13e-01 100.0% 70.0%
3231401 11.10.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.60 54.0 4.59e-01 100.0% 93.8%
3761946 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.59 51.0 4.76e-01 95.6% 83.5%
4937342 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.59 51.0 4.77e-01 98.9% 91.2%
3714965 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.58 53.0 4.67e-01 100.0% 89.2%
4420915 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.58 51.0 4.71e-01 100.0% 85.8%
3874886 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.58 52.0 4.40e-01 97.8% 69.0%
3281354 304.8.1.61 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › GDH_ACT1 0.58 44.0 3.65e-01 100.0% 45.6%
3225193 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.58 52.0 4.47e-01 100.0% 84.3%
3247634 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.58 52.0 4.55e-01 100.0% 88.9%
3213637 11.10.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.57 51.0 4.56e-01 100.0% 93.1%
3231372 11.10.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.57 51.0 4.53e-01 100.0% 93.1%
4085698 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.57 50.0 4.63e-01 100.0% 84.0%
3548538 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.56 51.0 3.61e-01 100.0% 59.6%
3364460 10.32.1.203 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.56 51.0 4.32e-01 100.0% 80.0%
3647799 302.4.1.0 ↗ a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.55 48.0 4.52e-01 100.0% 93.9%
3891423 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 50.0 4.44e-01 100.0% 74.6%
3211509 11.10.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.55 49.0 4.35e-01 100.0% 95.4%
3400203 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.55 48.0 4.37e-01 98.9% 88.0%
3399280 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.55 49.0 4.32e-01 98.9% 71.5%
4001742 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.54 48.0 3.54e-01 100.0% 37.2%
3191862 10.32.1.252 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF7371 0.54 49.0 3.88e-01 100.0% 57.8%
3262918 11.10.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.54 46.0 4.12e-01 98.9% 96.3%
5039235 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 48.0 4.55e-01 98.9% 82.7%
4972786 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.54 48.0 4.03e-01 100.0% 74.2%
3594020 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.54 46.0 3.65e-01 100.0% 89.8%
3223718 11.10.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.53 47.0 4.18e-01 100.0% 95.4%
3802001 207.1.1.174 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_3 0.53 46.0 2.89e-01 96.7% 19.0%
3206485 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 47.0 4.07e-01 100.0% 97.9%
3714935 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 46.0 3.87e-01 97.8% 100.0%
3724284 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.53 48.0 4.08e-01 100.0% 64.8%
3481131 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 47.0 4.08e-01 100.0% 74.3%
3936599 10.32.1.203 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.53 46.0 3.99e-01 100.0% 71.7%
3912164 10.32.1.20 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › FBA 0.53 46.0 3.48e-01 100.0% 47.8%
3327146 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 46.0 2.86e-01 98.9% 30.1%
4992755 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.53 46.0 4.64e-01 97.8% 100.0%
5033364 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 45.0 3.76e-01 93.3% 68.8%
3832688 4081.1.1.7 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Ribophorin_I 0.52 45.0 3.53e-01 100.0% 45.9%
3483501 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.51 42.0 3.83e-01 94.4% 66.4%
3594262 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 45.0 3.88e-01 100.0% 73.8%
3588405 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 44.0 3.53e-01 100.0% 84.2%
3624157 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 40.0 4.02e-01 97.8% 85.3%
3864261 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.50 45.0 3.86e-01 100.0% 94.5%
3992270 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.50 43.0 3.73e-01 100.0% 68.0%
D3 medium residues 222-298
PDB