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ME53

Euk-Vir

Spodoptera_littoralis_nucleopolyhedrovirus

ME53__YP_009505832__Spodoptera_littoralis_nucleopolyhedrovirus__10456

Identity

Accession:
YP_009505832 ↗
Protein ID:
ME53
Kingdom:
euk

Quality

85.2 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Spodoptera_littoralis_nucleopolyhedrovirus

TaxID: 10456

Cluster

View cluster (44 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-115
PDB
Domain cluster: rep: ME53__YP_009552580__Operophtera_brumata_nucleopolyhedrovirus__1046267__D14-103
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06061.17 best Baculo_ME53 46.7 3.90e-12 97.0% 27.9%
D2 high residues 119-212
PDB
Domain cluster: rep: me-53__YP_009186707__Sucra_jujuba_nucleopolyhedrovirus__1563660__D191-238_262-289
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06061.17 best Baculo_ME53 46.3 5.20e-12 98.9% 29.1%
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ffyA00 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.67 49.0 4.64e-01 94.7% 64.3%
3a27A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.64 42.0 3.17e-01 97.9% 28.8%
1rtzA00 3.30.70.560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK 0.60 39.0 3.33e-01 97.9% 40.8%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.59 52.0 5.02e-01 100.0% 97.2%
7jooC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 48.0 4.75e-01 87.2% 89.7%
4igbB02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 54.0 4.63e-01 100.0% 65.0%
7wguB01 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.58 40.0 4.13e-01 91.5% 74.7%
2vxaA00 3.30.1660.10 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin 0.58 39.0 4.54e-01 100.0% 100.0%
3onrJ00 3.30.1660.10 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin 0.58 38.0 4.28e-01 100.0% 92.6%
4zxhA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.56 38.0 3.18e-01 70.2% 42.0%
5jowA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 49.0 3.84e-01 97.9% 78.0%
3tp4B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 43.0 4.32e-01 94.7% 82.8%
2vngA00 2.60.120.1060 Mainly Beta › Sandwich › Jelly Rolls › NPCBM/NEW2 domain 0.55 48.0 3.96e-01 95.7% 54.4%
2j7qA00 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.55 48.0 3.68e-01 100.0% 56.3%
3q0hB00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 47.0 4.50e-01 92.6% 84.1%
6grqA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 38.0 3.99e-01 88.3% 83.0%
3skvA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 44.0 3.76e-01 98.9% 56.5%
2j42A02 2.60.120.240 Mainly Beta › Sandwich › Jelly Rolls › Protective antigen, heptamerisation domain 0.52 46.0 3.71e-01 97.9% 92.9%
1v8hA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 45.0 4.37e-01 94.7% 89.6%
1ollA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 40.0 4.08e-01 93.6% 83.2%
1vl4A01 3.30.2290.10 Alpha Beta › 2-Layer Sandwich › PmbA/TldD fold › PmbA/TldD superfamily 0.52 31.0 2.42e-01 84.0% 27.8%
2wngA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 39.0 4.07e-01 93.6% 88.5%
5vqfD01 2.60.120.970 Mainly Beta › Sandwich › Jelly Rolls › 0.51 44.0 3.41e-01 100.0% 70.8%
4hudA01 3.30.2000.40 Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser 0.51 45.0 3.40e-01 100.0% 42.9%
2b5iC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 40.0 4.00e-01 93.6% 84.4%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4569098 304.18.1.0 ↗ a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS 0.72 43.0 4.90e-01 100.0% 80.9%
4180852 304.18.1.1 ↗ a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB 0.70 45.0 4.46e-01 100.0% 62.2%
3589403 304.124.1.0 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.70 49.0 4.47e-01 98.9% 56.7%
4871888 226.1.1.4 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 0.67 40.0 4.29e-01 100.0% 69.1%
4421674 304.18.1.1 ↗ a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB 0.66 44.0 4.49e-01 100.0% 69.1%
4991988 3501.1.1.1 ↗ a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.62 33.0 3.77e-01 97.9% 68.6%
5045594 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.62 41.0 3.97e-01 85.1% 60.0%
3443343 11.10.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.61 55.0 4.76e-01 100.0% 96.6%
3408444 11.1.1.3 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig 0.61 50.0 4.76e-01 89.4% 89.1%
3245893 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 49.0 4.62e-01 89.4% 88.7%
3221683 11.10.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.60 53.0 4.73e-01 96.8% 95.4%
5056886 219.1.1.51 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39_2 0.59 51.0 4.09e-01 100.0% 84.9%
3221414 11.10.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.59 54.0 3.61e-01 100.0% 36.9%
3247634 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.59 54.0 4.74e-01 100.0% 91.9%
3609926 302.1.1.0 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain 0.59 52.0 4.69e-01 100.0% 86.2%
3220055 11.1.1.1023 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MATH 0.58 52.0 4.67e-01 98.9% 96.9%
3237716 11.10.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.58 52.0 4.59e-01 100.0% 90.7%
3573883 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.58 50.0 4.61e-01 98.9% 98.4%
4488199 11.1.1.1249 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF27332 0.58 49.0 4.22e-01 93.6% 70.9%
3433672 11.10.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.57 50.0 4.31e-01 98.9% 92.7%
3231376 11.10.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.56 51.0 4.57e-01 100.0% 96.9%
3724284 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.56 49.0 4.29e-01 98.9% 66.2%
4019571 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.56 49.0 3.90e-01 100.0% 60.0%
2723970 302.4.1.0 ↗ a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.55 47.0 4.38e-01 96.8% 96.7%
3891423 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 49.0 4.39e-01 98.9% 76.9%
4943994 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 46.0 4.57e-01 95.7% 87.0%
5054864 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 47.0 4.41e-01 95.7% 82.2%
3058471 10.1.1.27 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Alginate_lyase2 0.54 48.0 3.63e-01 98.9% 75.9%
5033364 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 46.0 3.84e-01 90.4% 69.5%
3243813 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.54 45.0 4.22e-01 92.6% 99.2%
3647799 302.4.1.0 ↗ a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.54 47.0 4.44e-01 100.0% 93.9%
4958132 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 48.0 4.32e-01 98.9% 78.5%
4931941 11.1.1.32 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Desulfoferrodox 0.53 46.0 4.35e-01 96.8% 91.3%
4976238 11.1.1.32 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Desulfoferrodox 0.53 46.0 4.31e-01 96.8% 88.2%
3953385 192.15.1.0 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.52 25.0 3.34e-01 79.8% 100.0%
3959590 3529.1.1.0 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.52 25.0 3.33e-01 76.6% 100.0%
3933156 11.1.1.835 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_Irg-7 0.52 44.0 4.16e-01 92.6% 82.6%
3702754 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 44.0 3.60e-01 100.0% 68.8%
5045852 302.4.1.1 ↗ a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C 0.51 45.0 4.32e-01 100.0% 99.1%
3217851 302.2.1.0 ↗ a+b two layers › Reverse ferredoxin › RuBisCO, small subunit › RuBisCO, small subunit 0.51 38.0 3.64e-01 80.9% 77.4%
3481210 10.30.1.0 ↗ beta sandwiches › jelly-roll › Latrophilin 1 gal_lectin domain › Latrophilin 1 gal_lectin domain 0.50 43.0 4.05e-01 96.8% 91.7%
4998687 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 40.0 3.59e-01 85.1% 76.9%
D3 high residues 224-286
PDB
Domain cluster: rep: ME53__YP_009666662__Mythimna_unipuncta_nucleopolyhedrovirus__447897__D304-356
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06061.17 best Baculo_ME53 41.7 1.30e-10 100.0% 19.4%