←Back to structures

ME53

Euk-Vir

Operophtera_brumata_nucleopolyhedrovirus

ME53__YP_009552580__Operophtera_brumata_nucleopolyhedrovirus__1046267

Identity

Accession:
YP_009552580 ↗
Protein ID:
ME53
Kingdom:
euk

Quality

70.7 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Operophtera_brumata_nucleopolyhedrovirus

TaxID: 1046267

Cluster

View cluster (44 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-103
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06061.17 best Baculo_ME53 39.4 6.40e-10 77.8% 22.4%
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7bv5D01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.55 46.0 3.80e-01 93.3% 98.8%
2qsdB02 3.50.100.10 Alpha Beta › 3-Layer(bba) Sandwich › protein il1583 fold › protein il1583 domain 0.53 35.0 3.77e-01 70.0% 79.5%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4011099 376.1.1.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ 0.70 42.0 4.86e-01 71.1% 83.1%
4016561 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.60 41.0 4.70e-01 72.2% 98.5%
5042718 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 32.0 3.51e-01 98.9% 77.3%
D2 high residues 113-207
PDB
Domain cluster: rep: me-53__YP_009186707__Sucra_jujuba_nucleopolyhedrovirus__1563660__D191-238_262-289
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06061.17 best Baculo_ME53 40.6 2.80e-10 100.0% 30.3%
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3e3pA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.61 38.0 4.19e-01 97.9% 76.9%
4kx7A01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.61 49.0 3.76e-01 98.9% 37.9%
4o1nD01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.61 50.0 4.73e-01 94.7% 74.8%
2xzmH02 3.30.1490.10 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.61 39.0 4.50e-01 92.6% 100.0%
7jooC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 47.0 4.75e-01 84.2% 89.7%
2z8lA01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.60 50.0 4.68e-01 98.9% 75.2%
1xeeA01 3.10.20.390 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Chemotaxis-inhibiting protein CHIPS 0.59 42.0 4.47e-01 85.3% 86.6%
4melA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 43.0 4.41e-01 93.7% 80.9%
2if7A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 48.0 4.68e-01 89.5% 87.5%
3q0hB00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 49.0 4.71e-01 91.6% 83.2%
4hudA01 3.30.2000.40 Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser 0.57 45.0 3.53e-01 85.3% 91.9%
3gm8A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 37.0 4.08e-01 90.5% 83.3%
1opoC01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.55 48.0 4.06e-01 100.0% 96.4%
3uxfA02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 47.0 3.93e-01 96.8% 63.9%
3d3aA03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 42.0 3.79e-01 96.8% 60.4%
5vqfD01 2.60.120.970 Mainly Beta › Sandwich › Jelly Rolls › 0.53 48.0 3.64e-01 100.0% 85.0%
3aj7A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 33.0 3.52e-01 95.8% 74.0%
6grqA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 39.0 4.01e-01 88.4% 83.0%
1cczA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 42.0 4.24e-01 90.5% 88.2%
1pgsA02 2.60.120.230 Mainly Beta › Sandwich › Jelly Rolls › 0.53 40.0 3.36e-01 83.2% 78.9%
3pdgA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 38.0 3.93e-01 91.6% 80.2%
1v8hA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 45.0 4.33e-01 92.6% 88.7%
3e0jB00 3.90.1030.20 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain 0.52 37.0 3.33e-01 75.8% 74.8%
2wngA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 40.0 4.18e-01 91.6% 89.7%
3eb7A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 45.0 3.70e-01 94.7% 59.8%
2b5iC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 40.0 4.06e-01 93.7% 84.4%
2oxgC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 43.0 4.21e-01 91.6% 85.1%
4mtmA01 2.60.40.3940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 40.0 4.02e-01 100.0% 86.5%
1p5uB00 2.60.40.1090 Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrial-type adhesion domain 0.50 45.0 3.89e-01 100.0% 72.5%
6r3mA01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.50 43.0 3.68e-01 98.9% 98.8%
7pjjA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 41.0 3.76e-01 95.8% 66.7%
2wq4A01 2.60.120.760 Mainly Beta › Sandwich › Jelly Rolls › 0.50 42.0 3.88e-01 95.8% 98.4%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3483514 4261.1.1.0 ↗ a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like 0.64 48.0 4.36e-01 100.0% 60.0%
3499719 4261.1.1.2 ↗ a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › BK_channel_a 0.64 48.0 4.36e-01 100.0% 60.0%
4013458 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.63 53.0 4.88e-01 97.9% 70.8%
5045594 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.63 41.0 3.99e-01 82.1% 59.0%
3554235 4261.1.1.2 ↗ a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › BK_channel_a 0.62 46.0 4.20e-01 100.0% 58.5%
3408444 11.1.1.3 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig 0.61 50.0 4.79e-01 88.4% 88.2%
3491694 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.59 48.0 4.32e-01 93.7% 62.2%
5040514 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.59 51.0 5.23e-01 93.7% 98.9%
3841071 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.57 49.0 4.21e-01 91.6% 61.4%
4488199 11.1.1.1249 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF27332 0.57 48.0 4.18e-01 93.7% 70.9%
4227886 11.1.1.246 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_7 0.56 38.0 4.14e-01 93.7% 83.7%
4653622 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 37.0 4.07e-01 91.6% 82.3%
3840244 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.56 46.0 4.49e-01 89.5% 83.8%
4855956 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.56 48.0 4.63e-01 93.7% 85.2%
3933148 73.1.1.3 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › MH2 0.55 44.0 3.42e-01 86.3% 91.6%
3748270 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 46.0 4.52e-01 91.6% 81.9%
3416046 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.55 48.0 4.59e-01 94.7% 89.1%
3225807 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.55 47.0 4.14e-01 93.7% 84.3%
5062578 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 46.0 4.62e-01 94.7% 89.5%
3189294 884.1.1.0 ↗ a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain 0.55 48.0 4.42e-01 96.8% 88.8%
3403553 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 47.0 4.34e-01 94.7% 85.0%
5054864 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 46.0 4.33e-01 93.7% 81.4%
4661931 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 46.0 4.01e-01 96.8% 76.7%
3902921 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 48.0 3.54e-01 97.9% 75.9%
5024539 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.53 46.0 4.09e-01 100.0% 66.7%
3632352 10.1.1.11 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 0.53 47.0 3.78e-01 100.0% 61.5%
4931941 11.1.1.32 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Desulfoferrodox 0.53 46.0 4.34e-01 95.8% 90.4%
5015965 11.1.1.32 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Desulfoferrodox 0.53 44.0 4.21e-01 92.6% 88.5%
4137458 10.32.1.18 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Endotoxin_C 0.52 44.0 3.70e-01 94.7% 53.3%
4976238 11.1.1.32 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Desulfoferrodox 0.52 45.0 4.23e-01 95.8% 86.6%
4283995 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 46.0 3.81e-01 95.8% 84.2%
5033364 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 43.0 3.69e-01 89.5% 68.8%
3583745 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 47.0 4.07e-01 98.9% 64.8%
4270512 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 43.0 4.01e-01 95.8% 71.7%
3485482 10.1.1.10 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.52 46.0 3.66e-01 100.0% 64.0%
4958132 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 46.0 4.18e-01 100.0% 78.5%
4092713 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 44.0 4.12e-01 95.8% 86.1%
3904839 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.50 42.0 4.07e-01 89.5% 82.9%
5080777 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.50 44.0 3.52e-01 100.0% 66.5%
4615428 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 43.0 4.04e-01 94.7% 85.2%
D3 high residues 237-310
PDB