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MF001355.1__ASZ76398.1__X__00112

Bact-Vir

MF001355.1__ASZ76398.1__X__00112

Identity

Accession:
MF001355 ↗
Kingdom:
phage

Quality

89.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Bragavirus› Proteus_phage_PM2

TaxID: 2025809

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 69-162
PDB
Domain cluster: rep: OV032902.1__CAH0447963.1__SM033_00139__00139__D168-264
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1qexA02 2.60.120.640 Mainly Beta › Sandwich › Jelly Rolls › gp9 0.91 86.0 8.29e-01 100.0% 89.3%
6o38A04 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.73 58.0 6.00e-01 100.0% 89.9%
6o38A01 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.69 59.0 5.98e-01 100.0% 95.7%
4dnyA00 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.68 58.0 5.50e-01 100.0% 79.8%
2wnkA01 2.60.40.1320 Mainly Beta › Sandwich › Immunoglobulin-like › SRS domain 0.60 41.0 3.81e-01 70.2% 93.2%
7rpyA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 49.0 4.80e-01 100.0% 85.4%
1sznA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.57 44.0 4.38e-01 84.0% 95.1%
1ulvA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 33.0 3.41e-01 74.5% 62.8%
2z4tA01 2.60.40.3010 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 33.0 3.41e-01 94.7% 64.1%
1dfxA00 2.60.40.730 Mainly Beta › Sandwich › Immunoglobulin-like › SOR catalytic domain 0.52 35.0 3.21e-01 94.7% 51.2%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
184462 520.1.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › gp9 N-terminal domain-related › gp9 N-terminal domain-related › T4_gp9_10 0.91 86.0 6.82e-01 100.0% 54.8%
1070458 520.1.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › gp9 N-terminal domain-related › gp9 N-terminal domain-related › T4_gp9_10 0.88 84.0 6.79e-01 100.0% 60.6%
185692 520.2.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.68 58.0 5.50e-01 100.0% 79.8%
4063416 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.60 44.0 3.99e-01 78.7% 73.8%
2775473 12.6.1.6 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Glyco_hydro_95_C 0.58 49.0 5.12e-01 97.9% 100.0%
3224738 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.56 46.0 4.38e-01 96.8% 80.0%
4488199 11.1.1.1249 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF27332 0.53 43.0 3.76e-01 90.4% 93.9%
3689503 4178.1.1.0 ↗ beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain 0.51 42.0 4.00e-01 96.8% 81.7%
D2 medium residues 1-60
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07880.17 best T4_gp9_10_N 40.8 3.60e-10 86.7% 22.9%
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1d8cA02 2.170.170.11 Mainly Beta › Beta Complex › Malate synthase G - maily-beta sub-domain › Malate synthase G - maily-beta sub-domain 0.65 44.0 3.47e-01 71.7% 65.6%
3piwA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.62 45.0 3.46e-01 81.7% 76.0%
4fxdA04 3.90.1600.10 Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain 0.61 48.0 3.59e-01 85.0% 75.2%
4bojA00 1.50.10.20 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.60 49.0 3.10e-01 91.7% 24.7%
3sxpA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 44.0 3.17e-01 91.7% 87.0%
2je6A01 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.55 46.0 3.08e-01 96.7% 71.6%
2h8lA02 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 43.0 3.59e-01 88.3% 84.8%
6h9xA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.54 46.0 2.90e-01 96.7% 58.0%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1237447 158.1.1.1 ↗ alpha bundles › Lipoxygenase › Lipoxygenase › Lipoxygenase › Lipoxygenase 0.65 49.0 2.86e-01 83.3% 36.8%
3306887 213.1.1.73 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › IDM1_C 0.62 51.0 3.50e-01 90.0% 49.3%
164044 2003.1.1.20 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.60 48.0 3.05e-01 90.0% 74.0%
4999425 2003.1.1.72 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GDP_Man_Dehyd 0.59 44.0 2.85e-01 83.3% 33.3%
3352161 2004.1.1.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.57 44.0 2.97e-01 83.3% 72.2%
4022616 2487.1.1.1 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › Cpn60_TCP1 0.55 48.0 3.60e-01 98.3% 62.6%
4991263 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.55 42.0 2.99e-01 83.3% 27.6%
3497581 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 45.0 4.39e-01 98.3% 98.6%
4997112 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 39.0 3.01e-01 76.7% 61.5%
3646041 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 43.0 3.53e-01 91.7% 73.0%
3276581 2003.1.2.16 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.53 39.0 2.56e-01 83.3% 26.7%