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MF001358.1__ASZ76699.1__X__00033
Bact-VirMF001358.1__ASZ76699.1__X__00033
Identity
- Accession:
- MF001358 ↗
- Kingdom:
- phage
Quality
80.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 19-50_150-293
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4hgzA02 | 2.20.25.570 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.58 | 20.0 | 3.42e-01 | 84.1% | 91.7% |
| 2fpnA01 | 3.30.2030.10 | Alpha Beta › 2-Layer Sandwich › TBP-like › YwmB-like | 0.55 | 32.0 | 3.52e-01 | 81.8% | 70.7% |
| 3dmbA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.50 | 33.0 | 3.64e-01 | 86.9% | 79.5% |
| 2hq7B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.50 | 33.0 | 3.63e-01 | 87.5% | 81.0% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3272198 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.57 | 48.0 | 4.11e-01 | 88.1% | 83.3% |
| 3273307 | 213.1.1.61 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › GNAT_LYC1-like | 0.50 | 41.0 | 3.89e-01 | 85.8% | 81.0% |
D2
high
residues 55-128
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2z16B01 | 1.20.91.10 | Mainly Alpha › Up-down Bundle › Influenza Virus Matrix Protein; Chain A, domain 1 › Influenza matrix M1, N-terminal subdomain 1 | 0.69 | 58.0 | 5.70e-01 | 98.6% | 87.2% |
| 3ibyD02 | 1.10.287.1770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.66 | 47.0 | 4.55e-01 | 97.3% | 66.7% |
| 4gx0A01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.64 | 51.0 | 4.57e-01 | 100.0% | 62.1% |
| 5l3wA01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.63 | 47.0 | 4.58e-01 | 79.7% | 77.4% |
| 2kjgA00 | 1.20.120.970 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.63 | 44.0 | 4.03e-01 | 79.7% | 54.5% |
| 4nleA03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.62 | 51.0 | 5.14e-01 | 97.3% | 92.1% |
| 8ctsB01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.61 | 49.0 | 4.72e-01 | 100.0% | 74.7% |
| 3b4qA00 | 1.10.1200.100 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › conserved protein domain from corynebacterium diphtheriae | 0.60 | 44.0 | 4.23e-01 | 90.5% | 66.7% |
| 5b00A00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.60 | 52.0 | 3.62e-01 | 100.0% | 39.5% |
| 6z4xA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.60 | 51.0 | 4.09e-01 | 97.3% | 51.6% |
| 2gscC00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.59 | 52.0 | 4.60e-01 | 100.0% | 83.6% |
| 3ddhA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.59 | 49.0 | 4.86e-01 | 95.9% | 92.6% |
| 2go7A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.59 | 44.0 | 4.60e-01 | 91.9% | 91.0% |
| 2kp7A01 | 1.10.150.110 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like | 0.59 | 46.0 | 4.69e-01 | 95.9% | 89.2% |
| 2bl7A00 | 1.20.1440.50 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like | 0.58 | 50.0 | 4.93e-01 | 100.0% | 96.2% |
| 4rocA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.57 | 48.0 | 4.33e-01 | 95.9% | 81.6% |
| 1w98B02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.57 | 48.0 | 4.24e-01 | 97.3% | 71.9% |
| 2rldA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.56 | 47.0 | 4.23e-01 | 100.0% | 79.8% |
| 4e40A00 | 1.20.1260.80 | Mainly Alpha › Up-down Bundle › Ferritin › | 0.56 | 49.0 | 3.46e-01 | 100.0% | 30.6% |
| 1tj7A01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.56 | 49.0 | 4.39e-01 | 100.0% | 78.1% |
| 4gmqA00 | 1.10.8.840 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ribosome-associated complex head domain | 0.55 | 45.0 | 4.20e-01 | 90.5% | 100.0% |
| 3c1yA02 | 1.20.1260.110 | Mainly Alpha › Up-down Bundle › Ferritin › DNA integrity scanning linker region | 0.55 | 43.0 | 3.50e-01 | 86.5% | 85.8% |
| 4akgA02 | 1.20.140.100 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Dynein motor heavy chain, linker domain, N-terminal subdomain | 0.55 | 43.0 | 3.35e-01 | 85.1% | 80.4% |
| 2au5A00 | 1.20.120.590 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › EF2947-like | 0.55 | 47.0 | 3.98e-01 | 97.3% | 59.7% |
| 2ex3B02 | 1.20.1270.230 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › DNA terminal protein Gp3, priming domain | 0.54 | 43.0 | 4.20e-01 | 89.2% | 87.7% |
| 1kblA05 | 1.20.80.30 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.54 | 45.0 | 4.33e-01 | 95.9% | 84.3% |
| 3w8hB00 | 1.10.12.70 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › | 0.54 | 39.0 | 4.13e-01 | 97.3% | 87.9% |
| 7rkxR01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.52 | 39.0 | 2.75e-01 | 83.8% | 33.8% |
| 3nbiA01 | 1.10.8.1020 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain | 0.52 | 37.0 | 4.12e-01 | 75.7% | 98.3% |
| 5xfaA04 | 1.20.1440.230 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain | 0.52 | 40.0 | 3.96e-01 | 93.2% | 92.9% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1596520 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.66 | 59.0 | 5.37e-01 | 100.0% | 84.7% |
| 4011174 | 5041.1.1.0 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C | 0.65 | 56.0 | 5.04e-01 | 100.0% | 72.4% |
| 3270762 | 5001.1.1.31 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › GPR180-TMEM145_TM | 0.64 | 55.0 | 3.78e-01 | 97.3% | 62.3% |
| 1674680 | 4085.1.1.1 ↗ | alpha arrays › RbcX-like › RbcX-like › RbcX-like › RbcX | 0.63 | 52.0 | 4.52e-01 | 100.0% | 59.3% |
| 3644708 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.62 | 45.0 | 3.26e-01 | 77.0% | 46.8% |
| 3518470 | 102.1.1.30 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_8 | 0.61 | 53.0 | 5.00e-01 | 100.0% | 81.1% |
| 4941150 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.61 | 52.0 | 4.45e-01 | 94.6% | 71.7% |
| 4039163 | 4049.1.1.0 ↗ | alpha superhelices › alpha-helical domain in siroheme synthase middle domains-like › alpha-helical domain in siroheme synthase middle domains-like › alpha-helical domain in siroheme synthase middle domains-like | 0.61 | 46.0 | 4.79e-01 | 82.4% | 98.6% |
| 3987637 | 5054.1.1.6 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH | 0.59 | 51.0 | 4.40e-01 | 100.0% | 62.5% |
| 3472906 | 601.1.2.2 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › I_LWEQ | 0.58 | 50.0 | 3.80e-01 | 100.0% | 65.3% |
| 4961640 | 5001.1.1.292 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › HisKA_7TM | 0.58 | 44.0 | 3.13e-01 | 83.8% | 33.8% |
| 3833909 | 633.4.1.1 ↗ | alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI | 0.58 | 51.0 | 4.19e-01 | 100.0% | 76.1% |
| 54292 | 633.10.1.0 ↗ | alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like | 0.57 | 48.0 | 4.29e-01 | 100.0% | 79.1% |
| 3644387 | 601.1.2.81 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › Serinc | 0.56 | 46.0 | 3.68e-01 | 90.5% | 49.3% |
| 4251398 | 4952.1.1.0 ↗ | alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like | 0.56 | 47.0 | 4.26e-01 | 95.9% | 79.0% |
| 4602904 | 6091.1.1.0 ↗ | alpha bundles › Helical bundle domain in Endo-alpha-N-acetylgalactosaminidase › Helical bundle domain in Endo-alpha-N-acetylgalactosaminidase › Helical bundle domain in Endo-alpha-N-acetylgalactosaminidase | 0.56 | 46.0 | 4.40e-01 | 90.5% | 82.4% |
| 5019629 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.56 | 41.0 | 3.37e-01 | 77.0% | 63.7% |
| 3186535 | 3929.1.1.0 ↗ | alpha bundles › THO1 C-terminal domain › THO1 C-terminal domain › THO1 C-terminal domain | 0.55 | 37.0 | 3.64e-01 | 97.3% | 63.3% |
| 4023374 | 3755.4.1.0 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain | 0.55 | 45.0 | 3.69e-01 | 89.2% | 86.7% |
| 3631365 | 5059.1.1.4 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › Nuc_sug_transp | 0.55 | 46.0 | 3.19e-01 | 98.6% | 79.2% |
| 4017411 | 3755.4.1.0 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain | 0.55 | 46.0 | 3.65e-01 | 93.2% | 78.7% |
| 3273576 | 5001.1.1.31 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › GPR180-TMEM145_TM | 0.54 | 45.0 | 3.25e-01 | 100.0% | 49.8% |
| 4159776 | 3294.1.1.1 ↗ | alpha complex topology › FAS type I helical domain › FAS type I helical domain › FAS type I helical domain › FAS_I_H | 0.53 | 47.0 | 3.32e-01 | 100.0% | 31.9% |
| 3994395 | 5038.2.1.0 ↗ | alpha superhelices › Cytochrome c oxidase subunit I-like › MAPEG domain-like › MAPEG domain-like | 0.53 | 43.0 | 3.74e-01 | 89.2% | 72.2% |
| 4464616 | 632.7.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 | 0.53 | 43.0 | 4.09e-01 | 90.5% | 78.9% |
| 5000225 | 4033.1.1.0 ↗ | alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like | 0.53 | 38.0 | 3.65e-01 | 77.0% | 67.1% |
| 3644649 | 601.1.2.74 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › Rx_N | 0.51 | 38.0 | 3.37e-01 | 82.4% | 83.5% |
| 3784566 | 604.1.1.191 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF29057 | 0.50 | 34.0 | 3.17e-01 | 71.6% | 88.0% |