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MF001358.1__ASZ76708.1__X__00042

Bact-Vir

MF001358.1__ASZ76708.1__X__00042

Identity

Accession:
MF001358 ↗
Kingdom:
phage

Quality

87.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Efunavirus› Efunavirus_EF1

TaxID: 3428451

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-131
PDB
Domain cluster: rep: OP056089.1__UYD72102.1__X__00002__D5-102
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13392.13 best HNH_3 35.0 1.20e-08 41.8% 95.7%
D2 high residues 145-207
PDB
Domain cluster: rep: OP310984.1__UXD83619.1__NP274_00212__00212__D3-72
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07453.20 best NUMOD1 23.7 6.40e-05 52.4% 73.0%
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u3eM02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 66.0 6.47e-01 88.9% 80.9%
4hh2B03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.66 45.0 3.85e-01 71.4% 84.0%
4d7sA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.62 42.0 3.29e-01 88.9% 33.8%
5d1oA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.59 46.0 4.41e-01 93.7% 72.6%
2w40A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.58 50.0 3.35e-01 98.4% 36.6%
3eipA00 3.10.50.20 Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein 0.56 46.0 4.14e-01 88.9% 90.5%
3a21A02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 35.0 3.14e-01 88.9% 44.0%
3x17A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 44.0 3.74e-01 90.5% 54.9%
2mkxA00 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.54 37.0 4.02e-01 71.4% 90.2%
2jfrA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.51 38.0 2.75e-01 85.7% 94.9%
3d33A00 2.60.40.3080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 39.0 3.43e-01 90.5% 55.3%
6pl6B01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 35.0 2.27e-01 74.6% 28.2%
2bg1A02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.50 40.0 2.59e-01 87.3% 76.9%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4414927 101.1.14.3 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 0.83 68.0 6.66e-01 88.9% 84.1%
3171408 101.1.14.3 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 0.83 62.0 6.83e-01 88.9% 100.0%
4384880 101.1.14.3 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 0.82 66.0 5.98e-01 87.3% 65.9%
2876 101.1.14.2 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › I-HmuI_NUMOD-like 0.81 66.0 6.44e-01 88.9% 79.7%
3058113 101.1.14.0 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases 0.80 61.0 6.62e-01 88.9% 98.1%
4155056 101.1.14.0 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases 0.78 63.0 5.84e-01 95.2% 70.0%
3217857 2484.1.1.175 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N+FGGY_C 0.60 54.0 3.17e-01 100.0% 21.0%
3205687 2484.1.1.6 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N 0.60 52.0 3.43e-01 98.4% 35.5%
4934101 2484.1.1.6 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N 0.59 51.0 3.37e-01 98.4% 35.2%
3838346 589.1.1.19 ↗ alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › Porin chaperone SurA, peptide-binding domain › Rotamase_2 0.59 45.0 3.20e-01 88.9% 41.7%
3474957 2484.1.1.6 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N 0.59 51.0 3.35e-01 98.4% 34.9%
3423282 2484.1.1.175 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N+FGGY_C 0.59 43.0 2.59e-01 82.5% 93.3%
4022813 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 44.0 2.58e-01 84.1% 26.3%
3540823 2484.1.1.175 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N+FGGY_C 0.58 51.0 3.00e-01 100.0% 21.4%
5040503 2484.1.1.6 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N 0.58 50.0 3.32e-01 98.4% 58.0%
4289138 2484.1.1.6 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N 0.57 50.0 3.31e-01 98.4% 44.6%
3601329 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.56 38.0 3.39e-01 88.9% 47.4%
3967001 2484.1.1.6 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N 0.56 48.0 3.30e-01 98.4% 39.6%
3271040 2484.1.1.6 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N 0.55 41.0 2.75e-01 82.5% 99.6%
3900178 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.55 42.0 3.61e-01 95.2% 53.1%
3724523 4121.1.1.7 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › PF26616 0.52 42.0 2.76e-01 100.0% 52.5%
3977310 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 35.0 2.97e-01 73.0% 60.8%
3601494 210.2.1.0 ↗ a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain 0.51 38.0 2.56e-01 85.7% 93.5%
3639558 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.50 39.0 4.03e-01 87.3% 98.3%
4881621 10.12.1.43 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-Fe_Oxy_2 0.50 36.0 2.56e-01 79.4% 89.1%
D3 high residues 210-264
PDB
Domain cluster: rep: IMGVR_UViG_3300028627_000020-3300028627-Ga0302243_100046048__D171-228
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u3eM02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 66.0 6.15e-01 100.0% 73.5%
1lciA03 2.30.38.10 Mainly Beta › Roll › Luciferase; domain 3 › Luciferase; Domain 3 0.67 32.0 2.85e-01 100.0% 31.2%
6hn7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 38.0 3.54e-01 74.5% 41.7%
2lvhA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.59 40.0 4.21e-01 100.0% 86.7%
6hmjA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 43.0 3.56e-01 80.0% 89.5%
3l2pA03 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.57 35.0 2.81e-01 100.0% 28.3%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.56 40.0 3.79e-01 100.0% 63.6%
2mtzA01 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.54 39.0 4.09e-01 78.2% 96.0%
2yuxA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 36.0 2.99e-01 100.0% 37.0%
2djpA00 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.52 37.0 3.36e-01 90.9% 55.8%
1wgrA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 39.0 3.57e-01 90.9% 98.8%
2mkxA00 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.51 37.0 3.84e-01 80.0% 96.1%
1jceA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 42.0 3.06e-01 100.0% 32.7%
4jndA02 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.51 39.0 2.68e-01 96.4% 93.2%
4qq1C03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.51 41.0 3.69e-01 100.0% 86.4%
5c8qB02 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.51 39.0 4.18e-01 89.1% 97.8%
1bu6O01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 42.0 2.78e-01 100.0% 32.3%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4414927 101.1.14.3 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 0.82 69.0 6.43e-01 100.0% 73.9%
3587703 101.1.14.0 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases 0.80 63.0 6.60e-01 98.2% 96.0%
4384880 101.1.14.3 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 0.80 67.0 5.84e-01 100.0% 61.2%
3171408 101.1.14.3 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 0.78 63.0 6.55e-01 96.4% 98.0%
4155056 101.1.14.0 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases 0.76 64.0 5.67e-01 100.0% 65.0%
4519945 101.1.14.4 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › PF31232 0.75 65.0 6.63e-01 98.2% 100.0%
3923587 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.61 43.0 4.61e-01 100.0% 91.1%
3336399 386.1.1.63 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_3rep 0.60 39.0 3.77e-01 100.0% 56.9%
3476358 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.60 41.0 3.99e-01 70.9% 93.3%
4406921 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.58 44.0 3.94e-01 87.3% 84.7%
3413357 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.57 40.0 3.70e-01 94.5% 58.6%
3232962 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.56 39.0 3.87e-01 94.5% 68.3%
3517460 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.56 39.0 3.94e-01 94.5% 74.5%
3970704 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.56 40.0 3.84e-01 78.2% 80.0%
3838194 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.55 38.0 4.12e-01 94.5% 88.9%
3846469 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.55 39.0 3.30e-01 94.5% 45.6%
3456918 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.55 41.0 3.40e-01 80.0% 75.0%
3190345 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.55 40.0 4.09e-01 80.0% 96.4%
3977310 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 39.0 3.22e-01 81.8% 53.3%
3925474 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.54 38.0 4.01e-01 94.5% 82.0%
2074716 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.54 39.0 4.03e-01 78.2% 100.0%
3903953 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.54 39.0 4.08e-01 80.0% 100.0%
3691758 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.54 39.0 3.98e-01 80.0% 92.7%
3720958 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.53 41.0 4.32e-01 83.6% 96.0%
3320955 101.15.1.5 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 0.53 39.0 3.77e-01 80.0% 80.0%
3997867 2484.1.1.6 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N 0.53 47.0 3.12e-01 100.0% 45.1%
3458171 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.52 40.0 3.77e-01 89.1% 69.2%
3366484 210.2.1.1 ↗ a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.52 40.0 2.71e-01 94.5% 90.3%
3611431 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.52 40.0 3.94e-01 83.6% 95.0%
4491522 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.52 38.0 3.78e-01 81.8% 86.7%
2047861 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.52 39.0 3.90e-01 89.1% 77.6%
2103395 308.2.1.0 ↗ a+b two layers › ClpS-like › Penicillin binding protein ClpS-like domain › Penicillin binding protein ClpS-like domain 0.52 47.0 4.14e-01 100.0% 100.0%
3452845 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.52 38.0 3.89e-01 89.1% 80.0%
162111 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.52 37.0 3.36e-01 90.9% 55.8%
3337080 101.15.1.5 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 0.51 39.0 3.84e-01 81.8% 86.7%
4149501 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.51 38.0 3.91e-01 80.0% 100.0%
4468802 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.51 39.0 3.52e-01 83.6% 97.5%
3633502 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.51 40.0 3.57e-01 83.6% 92.3%
3324708 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.51 40.0 3.91e-01 85.5% 81.7%
3165082 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.51 39.0 4.09e-01 90.9% 94.0%
3331840 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.51 39.0 3.99e-01 85.5% 90.9%
4492966 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.51 38.0 3.89e-01 83.6% 90.9%
4955757 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 32.0 2.60e-01 90.9% 30.4%
3303205 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.50 38.0 3.74e-01 85.5% 96.7%