←Back to structures

MF001358.1__ASZ76824.1__X__00158

Bact-Vir

MF001358.1__ASZ76824.1__X__00158

Identity

Accession:
MF001358 ↗
Kingdom:
phage

Quality

81.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Efunavirus› Efunavirus_EF1

TaxID: 3428451

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 26-134
PDB
Domain cluster: rep: SRR1747022_scaffold_43_prodigal-single.1__X__X__00137__D44-133
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.66 38.0 4.62e-01 96.3% 92.4%
2r6fA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.62 40.0 4.71e-01 92.7% 100.0%
1j5yA02 3.30.1340.20 Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › 3H domain 0.62 40.0 4.09e-01 100.0% 67.3%
4pofA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.61 29.0 3.98e-01 84.4% 96.0%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 33.0 3.95e-01 95.4% 83.8%
1ltlA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.56 27.0 3.58e-01 84.4% 93.9%
3au4A04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 35.0 3.72e-01 90.8% 74.2%
6hj2A00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.54 39.0 2.96e-01 77.1% 74.5%
3cvzB01 3.30.1490.290 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Low molecular weight S-layer protein, domain 1 0.53 42.0 4.43e-01 92.7% 93.9%
1b04A02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.52 41.0 4.35e-01 88.1% 93.9%
2codA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 35.0 3.71e-01 93.6% 78.1%
4qa8A00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.50 43.0 3.53e-01 96.3% 92.4%
4iapA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 33.0 3.61e-01 97.2% 80.4%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5066729 632.3.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain 0.67 38.0 4.19e-01 99.1% 67.8%
2496895 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 43.0 4.57e-01 100.0% 74.2%
4065466 220.1.1.150 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF986 0.62 30.0 3.51e-01 81.7% 63.7%
4988 322.1.1.2 ↗ a+b two layers › HPr-like › HPr-like › HPr-like › 3H 0.62 40.0 4.09e-01 100.0% 67.3%
3513347 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 38.0 4.11e-01 90.8% 82.2%
5029262 4114.1.1.0 ↗ a+b two layers › PHP14-like › PHP14-like › PHP14-like 0.56 34.0 3.38e-01 83.5% 55.5%
3920767 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 35.0 3.69e-01 94.5% 70.0%
3919542 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.55 35.0 3.68e-01 94.5% 70.0%
3890749 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 36.0 3.90e-01 97.2% 81.1%
3264236 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.54 33.0 3.43e-01 90.8% 66.0%
3572708 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 35.0 3.52e-01 94.5% 65.2%
3887127 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 35.0 3.39e-01 94.5% 61.7%
4397669 7523.1.1.55 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Lipoprotein_10, PF27319 0.51 38.0 2.99e-01 80.7% 91.7%
3906078 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 34.0 3.59e-01 94.5% 76.0%