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MF001358.1__ASZ76828.1__X__00162
Bact-VirMF001358.1__ASZ76828.1__X__00162
Identity
- Accession:
- MF001358 ↗
- Kingdom:
- phage
Quality
93.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 37-112
Domain cluster:
rep: OR354837.1__WNM53742.1__CoNPh14_CDS0061__00061__D309-368
D2
medium
residues 1-36_113-203
Domain cluster:
rep: NC_049857.1__YP_009905650.1__H1Z36_gp116__00131__D341-362_777-819_866-939
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07733.19 best | DNA_pol3_alpha | 37.2 | 3.70e-09 | 41.7% | 20.0% |
| PF07733.19 | DNA_pol3_alpha | 26.7 | 5.80e-06 | 33.1% | 15.0% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4lqbA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.72 | 34.0 | 3.45e-01 | 74.0% | 43.8% |
| 8aidA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.68 | 31.0 | 3.10e-01 | 74.0% | 42.6% |
| 3rheA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.67 | 31.0 | 3.32e-01 | 75.6% | 49.1% |
| 4gymB00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.57 | 32.0 | 3.06e-01 | 94.5% | 47.2% |
| 4ihqA01 | 3.30.450.370 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.50 | 25.0 | 2.33e-01 | 70.9% | 35.2% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1117589 | 316.1.1.17 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol3_alpha | 0.93 | 65.0 | 4.64e-01 | 70.9% | 49.5% |
| 4142452 | 316.1.1.17 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol3_alpha | 0.92 | 63.0 | 4.86e-01 | 70.1% | 54.4% |
| 3969389 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.88 | 61.0 | 4.58e-01 | 70.9% | 57.1% |
| 4660116 | 316.1.1.17 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol3_alpha | 0.88 | 62.0 | 4.65e-01 | 72.4% | 56.8% |
| 1761201 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.73 | 33.0 | 4.59e-01 | 72.4% | 85.9% |
| 3565560 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.62 | 36.0 | 4.40e-01 | 72.4% | 87.1% |
| 3856133 | 211.1.1.17 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › GLOD4_C | 0.60 | 30.0 | 3.41e-01 | 73.2% | 62.0% |
| 3286467 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.59 | 34.0 | 2.92e-01 | 73.2% | 36.8% |
| 4289183 | 7580.1.1.1 ↗ | a/b three-layered sandwiches › RibA-like › RibA-like › RibA-like › GTP_cyclohydro2 | 0.52 | 29.0 | 2.76e-01 | 99.2% | 43.0% |
| 3605458 | 309.1.1.16 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16, Peptidase_M16_C, M16C_assoc, PreP_C | 0.52 | 39.0 | 2.36e-01 | 80.3% | 32.6% |
| 4975368 | 297.1.1.2 ↗ | a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › Sua5_yciO_yrdC | 0.51 | 35.0 | 3.06e-01 | 70.9% | 83.9% |
D3
medium
residues 304-374
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3f2bA07 | 6.10.140.1510 | Special › Helix non-globular › Helix Hairpins › | 0.76 | 60.0 | 5.65e-01 | 100.0% | 70.9% |
| 1k6kA00 | 1.10.1780.10 | Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain | 0.64 | 44.0 | 3.56e-01 | 71.8% | 44.4% |
| 3tahA02 | 1.10.287.1770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.59 | 48.0 | 4.53e-01 | 97.2% | 75.0% |
| 3ff5A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 36.0 | 3.98e-01 | 87.3% | 83.3% |
| 1ti2A03 | 3.40.228.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dimethylsulfoxide Reductase; domain 2 › Dimethylsulfoxide Reductase, domain 2 | 0.55 | 47.0 | 3.21e-01 | 98.6% | 34.2% |
| 1jq5A02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.55 | 45.0 | 3.39e-01 | 95.8% | 50.5% |
| 4i8qA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.55 | 48.0 | 3.21e-01 | 100.0% | 64.9% |
| 1o0wA01 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.52 | 40.0 | 3.21e-01 | 85.9% | 91.6% |
| 1usyC00 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.52 | 42.0 | 2.93e-01 | 95.8% | 35.8% |
| 3uo2A01 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.51 | 37.0 | 3.66e-01 | 95.8% | 73.1% |
| 3ed5A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.51 | 41.0 | 3.99e-01 | 94.4% | 90.5% |
| 2ffjA01 | 1.10.8.380 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 | 0.51 | 35.0 | 3.75e-01 | 71.8% | 98.2% |
| 7craA02 | 1.20.58.1480 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 40.0 | 3.75e-01 | 90.1% | 77.2% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3787065 | 109.4.1.381 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Rrn11 | 0.64 | 44.0 | 3.09e-01 | 80.3% | 22.2% |
| 4032497 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.62 | 50.0 | 5.10e-01 | 85.9% | 100.0% |
| 4952939 | 148.1.3.251 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF30647 | 0.61 | 51.0 | 5.18e-01 | 97.2% | 97.1% |
| 4667477 | 633.21.1.6 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › Aim19 | 0.61 | 50.0 | 4.41e-01 | 95.8% | 78.1% |
| 3987996 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.61 | 49.0 | 5.02e-01 | 88.7% | 100.0% |
| 4952942 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.57 | 48.0 | 4.45e-01 | 93.0% | 75.6% |
| 3399081 | 6108.1.1.6 ↗ | alpha bundles › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins › Mpv17_PMP22 | 0.55 | 44.0 | 3.47e-01 | 93.0% | 82.4% |
| 52376 | 171.1.1.0 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like | 0.54 | 45.0 | 3.52e-01 | 97.2% | 64.7% |
| 3990273 | 188.1.1.1 ↗ | alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep | 0.53 | 39.0 | 3.08e-01 | 81.7% | 46.6% |
| 3683182 | 171.1.1.1 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 | 0.52 | 44.0 | 3.26e-01 | 95.8% | 75.8% |
| 5072295 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.51 | 42.0 | 3.09e-01 | 100.0% | 70.0% |
| 4172739 | 171.1.1.4 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 | 0.51 | 43.0 | 3.46e-01 | 95.8% | 95.3% |
| 3871141 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.51 | 41.0 | 3.09e-01 | 95.8% | 75.7% |