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MF001361.1__ASZ77434.1__X__00059

Bact-Vir

MF001361.1__ASZ77434.1__X__00059

Identity

Accession:
MF001361 ↗
Kingdom:
phage

Quality

74.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-106
PDB
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1pjrA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.70 62.0 4.78e-01 100.0% 63.4%
3dmqA04 3.40.50.10810 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tandem AAA-ATPase domain 0.65 57.0 3.96e-01 100.0% 76.8%
7ml0001 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 56.0 4.22e-01 100.0% 81.5%
1wcwA02 3.40.50.10090 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.64 57.0 5.21e-01 100.0% 91.6%
5t5dA00 3.40.35.10 Alpha Beta › 3-Layer(aba) Sandwich › Fructose Permease › Phosphotransferase system, sorbose subfamily IIB component 0.63 55.0 4.68e-01 100.0% 62.0%
4pcaB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 55.0 4.18e-01 100.0% 65.1%
2c61A00 3.40.50.12240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.62 54.0 3.49e-01 100.0% 39.2%
3lfjB00 3.40.35.10 Alpha Beta › 3-Layer(aba) Sandwich › Fructose Permease › Phosphotransferase system, sorbose subfamily IIB component 0.62 54.0 4.43e-01 100.0% 54.2%
1bleA00 3.40.35.10 Alpha Beta › 3-Layer(aba) Sandwich › Fructose Permease › Phosphotransferase system, sorbose subfamily IIB component 0.61 53.0 4.47e-01 100.0% 59.0%
2gpyB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.61 54.0 4.25e-01 100.0% 61.5%
3eyeA00 3.40.35.10 Alpha Beta › 3-Layer(aba) Sandwich › Fructose Permease › Phosphotransferase system, sorbose subfamily IIB component 0.61 54.0 4.55e-01 100.0% 62.1%
6k6wC01 3.40.50.10710 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Metallo-hydrolase/oxidoreductase 0.61 53.0 4.53e-01 100.0% 94.6%
3p3vA00 3.40.35.10 Alpha Beta › 3-Layer(aba) Sandwich › Fructose Permease › Phosphotransferase system, sorbose subfamily IIB component 0.61 53.0 4.42e-01 100.0% 54.7%
2xdqB01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.61 53.0 4.56e-01 100.0% 84.4%
2npnA01 3.40.1010.10 Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › Tetrapyrrole methylase, N-terminal domain 0.60 53.0 4.70e-01 100.0% 83.7%
3x0dA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.60 53.0 4.49e-01 100.0% 62.9%
2o1sA02 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.60 52.0 4.24e-01 100.0% 85.9%
1mjgM02 3.40.50.2030 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.60 51.0 4.17e-01 100.0% 72.3%
4rxlA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.60 46.0 4.20e-01 88.6% 62.4%
1lwdA00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.60 52.0 3.41e-01 100.0% 24.5%
5ahkA01 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.59 51.0 4.10e-01 100.0% 78.1%
5tdeA03 3.40.50.261 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Succinyl-CoA synthetase domains 0.59 47.0 3.77e-01 89.8% 69.3%
4kxvA02 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.59 51.0 4.03e-01 100.0% 78.4%
5ereA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.59 50.0 4.45e-01 100.0% 92.7%
3ieiA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 51.0 3.55e-01 100.0% 40.6%
2rinA02 3.40.190.100 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Glycine betaine-binding periplasmic protein; domain 2 0.57 49.0 4.67e-01 100.0% 89.1%
3dnfA03 3.40.1010.20 Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, catalytic domain 0.57 50.0 4.83e-01 100.0% 87.9%
3l41A02 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.57 47.0 4.38e-01 92.0% 90.3%
3szuA03 3.40.1010.20 Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, catalytic domain 0.57 50.0 4.86e-01 100.0% 89.0%
2hwwB00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.57 48.0 4.12e-01 100.0% 82.8%
3mebA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.57 49.0 3.52e-01 100.0% 61.0%
3fzvA03 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.56 49.0 4.68e-01 100.0% 87.7%
2r6hA02 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.56 46.0 4.28e-01 94.3% 91.5%
2a3nA02 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.56 48.0 4.06e-01 100.0% 57.1%
1ab5A00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.56 45.0 4.09e-01 90.9% 80.0%
2jfqA02 3.40.50.1860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 49.0 4.54e-01 100.0% 96.5%
3knzA02 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.56 48.0 4.14e-01 100.0% 71.2%
4wxmB00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 44.0 4.00e-01 90.9% 77.5%
2au3A03 3.40.1360.10 Alpha Beta › 3-Layer(aba) Sandwich › Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 › 0.55 47.0 4.20e-01 93.2% 87.1%
3hbaA02 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.55 44.0 4.10e-01 100.0% 69.6%
4xrpC01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 47.0 3.85e-01 100.0% 52.6%
3fj1A02 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.54 46.0 4.09e-01 100.0% 75.0%
7e5wA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.54 46.0 4.17e-01 100.0% 73.4%
1jflA02 3.40.50.1860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 45.0 4.27e-01 100.0% 99.1%
5fg3A03 3.40.50.10050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Translation initiation factor IF- 2, domain 3 0.52 43.0 3.95e-01 89.8% 68.7%
2qmxA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.52 40.0 4.08e-01 98.9% 88.4%
6q2eA01 3.40.50.11840 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Diphthamide synthesis DPH1/DPH2 domain 1 0.52 44.0 4.45e-01 100.0% 98.9%
2q5cA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 42.0 4.10e-01 92.0% 93.8%
1a3cA00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 44.0 3.70e-01 100.0% 70.5%
2z1dA01 3.40.50.11750 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HypD, alpha/beta domain 1 0.51 44.0 3.84e-01 100.0% 86.5%
7sglD01 3.40.50.12650 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 41.0 3.62e-01 100.0% 58.4%
4ombA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.51 43.0 3.69e-01 100.0% 94.2%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4968904 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.74 67.0 4.49e-01 100.0% 80.0%
3933435 2004.1.1.144 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD_2 0.72 65.0 4.44e-01 100.0% 82.9%
5005259 2004.1.1.49 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase 0.70 62.0 3.68e-01 100.0% 33.3%
5026908 2004.1.1.30 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.65 58.0 4.38e-01 100.0% 80.9%
2095512 2003.1.5.13 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.65 57.0 4.28e-01 100.0% 80.2%
5078443 2004.1.1.790 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GvpD_P-loop 0.64 57.0 4.25e-01 100.0% 61.8%
4962716 2004.1.1.176 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Beta-Casp 0.63 55.0 4.58e-01 100.0% 95.2%
4941014 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.63 56.0 4.40e-01 100.0% 85.0%
1907456 7537.1.1.1 a/b three-layered sandwiches › PTS IIb component › PTS IIb component › PTS IIb component › PTSIIB_sorb 0.63 55.0 4.68e-01 100.0% 62.0%
5014174 2006.1.3.9 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › OLD-like_TOPRIM 0.63 51.0 4.67e-01 89.8% 82.5%
3173535 2004.1.1.239 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SLFN-g3_helicase 0.62 54.0 4.17e-01 100.0% 50.7%
4950792 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.62 55.0 3.95e-01 100.0% 89.3%
3945569 7537.1.1.1 a/b three-layered sandwiches › PTS IIb component › PTS IIb component › PTS IIb component › PTSIIB_sorb 0.62 55.0 4.61e-01 100.0% 61.3%
4477847 2004.1.1.231 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RNase_J_b_CASP 0.62 55.0 4.57e-01 100.0% 55.0%
3257428 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 54.0 3.84e-01 100.0% 39.8%
141634 7537.1.1.1 a/b three-layered sandwiches › PTS IIb component › PTS IIb component › PTS IIb component › PTSIIB_sorb 0.62 54.0 4.45e-01 100.0% 57.6%
169395 7537.1.1.1 a/b three-layered sandwiches › PTS IIb component › PTS IIb component › PTS IIb component › PTSIIB_sorb 0.61 54.0 4.55e-01 100.0% 62.1%
3589061 7537.1.1.1 a/b three-layered sandwiches › PTS IIb component › PTS IIb component › PTS IIb component › PTSIIB_sorb 0.61 53.0 4.40e-01 100.0% 55.5%
4965842 2003.1.5.13 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.61 53.0 3.82e-01 100.0% 51.9%
3741592 2007.1.5.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like › Asp_Glu_race 0.61 54.0 4.71e-01 100.0% 82.2%
5018381 7574.1.1.7 a/b three-layered sandwiches › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › TPP_enzyme_N 0.60 52.0 4.14e-01 100.0% 70.0%
5060606 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.60 52.0 4.18e-01 100.0% 83.8%
2812619 7523.1.1.8 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_1 0.60 46.0 4.49e-01 92.0% 75.8%
1524144 7523.1.1.30 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_11 0.60 46.0 4.75e-01 88.6% 92.4%
1518789 7523.1.1.29 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.60 46.0 4.49e-01 89.8% 75.0%
1520397 7523.1.1.28 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_8 0.60 47.0 4.42e-01 88.6% 70.8%
1518787 7523.1.1.8 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_1 0.59 46.0 4.49e-01 92.0% 75.5%
5035118 2003.1.5.6 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltr_RsmB-F 0.59 50.0 4.75e-01 100.0% 79.0%
3390077 2007.1.2.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.58 50.0 4.23e-01 100.0% 84.4%
4975783 7574.1.1.0 a/b three-layered sandwiches › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) 0.58 51.0 3.84e-01 100.0% 68.3%
3312116 2007.1.2.41 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › TPP_enzyme_N 0.58 50.0 4.52e-01 98.9% 71.2%
2392374 7523.1.1.8 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_1 0.58 44.0 4.29e-01 92.0% 75.0%
4813426 7523.1.1.8 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_1 0.57 49.0 3.96e-01 100.0% 49.7%
2073780 2007.1.5.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like › Asp_Glu_race 0.56 47.0 4.11e-01 90.9% 74.0%
3410203 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 48.0 3.88e-01 100.0% 85.3%
3214245 2006.1.4.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.55 47.0 4.26e-01 100.0% 80.6%
3396853 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.55 47.0 4.29e-01 97.7% 90.0%
3255681 2007.1.3.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.55 45.0 4.09e-01 94.3% 82.4%
4933285 2003.1.1.29 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › OCD_Mu_crystall 0.55 47.0 3.81e-01 100.0% 83.2%
4977308 7526.1.1.0 a/b three-layered sandwiches › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 0.54 44.0 4.07e-01 89.8% 68.7%
4947035 7526.1.1.7 a/b three-layered sandwiches › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 › GTP_EFTU_D4 0.54 43.0 4.08e-01 89.8% 71.8%
5001352 7526.1.1.1 a/b three-layered sandwiches › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 › IF-2 0.53 42.0 3.89e-01 88.6% 65.8%
5073208 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.53 46.0 3.32e-01 100.0% 70.4%
3995615 2007.6.1.1 a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › Ribosomal_S2 0.53 45.0 3.52e-01 98.9% 51.2%
1885166 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.53 45.0 4.23e-01 98.9% 77.0%
3663153 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 45.0 3.42e-01 100.0% 78.7%
3825787 7588.1.1.2 a/b three-layered sandwiches › NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase › NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase › NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase › NadA 0.51 43.0 4.00e-01 100.0% 95.0%
2703489 7523.1.1.23 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › PBP_like_2 0.50 41.0 4.15e-01 98.9% 93.1%
4864988 3003.1.1.1 a+b complex topology › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › MCM_N 0.50 40.0 4.20e-01 88.6% 94.9%