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MF001365.1__ASZ78150.1__X__00177
Bact-VirMF001365.1__ASZ78150.1__X__00177
Identity
- Accession:
- MF001365 ↗
- Kingdom:
- phage
Quality
93.2
mean pLDDT
Taxonomy
TaxID: 2025821
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-79
Domain cluster:
representative
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3tj8A02 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.68 | 46.0 | 4.76e-01 | 100.0% | 74.3% |
| 3na2A00 | 3.40.1570.20 | Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › | 0.68 | 54.0 | 4.53e-01 | 88.5% | 94.2% |
| 3r4cA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.65 | 56.0 | 5.16e-01 | 96.2% | 88.1% |
| 2rbkA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.62 | 53.0 | 4.90e-01 | 96.2% | 88.1% |
| 1oeyL00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.62 | 46.0 | 4.24e-01 | 78.2% | 83.7% |
| 3gmgA00 | 3.30.70.1880 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function DUF881 | 0.61 | 52.0 | 4.40e-01 | 100.0% | 71.3% |
| 4izoA02 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.61 | 43.0 | 4.57e-01 | 78.2% | 88.1% |
| 1nf2A02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.59 | 50.0 | 4.58e-01 | 96.2% | 88.7% |
| 1fu0A00 | 3.30.1340.10 | Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › HPr-like | 0.59 | 50.0 | 4.85e-01 | 96.2% | 96.6% |
| 1wi0A00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.59 | 44.0 | 3.91e-01 | 79.5% | 78.8% |
| 3tiiA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.59 | 43.0 | 4.60e-01 | 78.2% | 98.5% |
| 2pq0A02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.59 | 49.0 | 4.60e-01 | 94.9% | 88.0% |
| 1uc8A02 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.59 | 40.0 | 4.53e-01 | 78.2% | 98.2% |
| 2kkcA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.59 | 44.0 | 4.06e-01 | 79.5% | 93.0% |
| 2c60A01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.59 | 43.0 | 4.33e-01 | 78.2% | 91.1% |
| 2o5hA00 | 1.10.3510.10 | Mainly Alpha › Orthogonal Bundle › NMB0513-like › NMB0513-like | 0.58 | 51.0 | 4.35e-01 | 100.0% | 76.6% |
| 2atzA00 | 3.90.920.20 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › HP0184-like | 0.56 | 43.0 | 3.40e-01 | 84.6% | 83.5% |
| 3fzqA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.56 | 46.0 | 4.12e-01 | 93.6% | 87.0% |
| 1jelP00 | 3.30.1340.10 | Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › HPr-like | 0.56 | 47.0 | 4.62e-01 | 97.4% | 94.1% |
| 5t17A00 | 3.30.1340.10 | Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › HPr-like | 0.56 | 47.0 | 4.62e-01 | 97.4% | 95.3% |
| 3tm8B00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.55 | 47.0 | 3.21e-01 | 97.4% | 32.2% |
| 3ejbB01 | 3.30.43.20 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 › | 0.55 | 32.0 | 3.22e-01 | 98.7% | 53.0% |
| 1um1A00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.53 | 43.0 | 3.87e-01 | 89.7% | 86.4% |
| 2pmzK00 | 3.90.940.10 | Alpha Beta › Alpha-Beta Complex › Eukaryotic RPB6 RNA polymerase subunit › RNA polymerase subunit, RPB6/omega | 0.53 | 41.0 | 4.06e-01 | 88.5% | 79.3% |
| 1x9nA02 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.52 | 43.0 | 4.20e-01 | 98.7% | 84.5% |
| 3jamK00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 43.0 | 4.02e-01 | 100.0% | 74.0% |
| 3fryA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 35.0 | 3.76e-01 | 89.7% | 87.5% |
| 1tbxB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 41.0 | 3.92e-01 | 89.7% | 74.4% |
| 1ujdA00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.51 | 39.0 | 3.53e-01 | 85.9% | 84.6% |
| 2gqfA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 42.0 | 3.09e-01 | 97.4% | 84.7% |
| 3u1nB01 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.50 | 41.0 | 2.77e-01 | 92.3% | 89.9% |
| 3u7vA02 | 2.60.220.20 | Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › putative beta-Galactosidase from caulobacter crescentus | 0.50 | 37.0 | 3.09e-01 | 79.5% | 45.8% |
| 1lxnA00 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 42.0 | 3.98e-01 | 100.0% | 76.5% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 432311 | 304.22.1.1 ↗ | a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C | 0.68 | 46.0 | 4.61e-01 | 100.0% | 68.8% |
| 140040 | 4216.1.1.3 ↗ | a+b duplicates or obligate multimers › Heme iron utilization protein-like › Heme iron utilization protein-like › Heme iron utilization protein-like › LFE_1968-like | 0.68 | 54.0 | 4.53e-01 | 88.5% | 94.2% |
| 3204956 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.67 | 49.0 | 4.30e-01 | 78.2% | 69.2% |
| 2573463 | 302.3.1.0 ↗ | a+b two layers › Reverse ferredoxin › a+b domain in low-molecular-weight S-layer protein › a+b domain in low-molecular-weight S-layer protein | 0.67 | 50.0 | 4.85e-01 | 80.8% | 87.6% |
| 3593442 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.67 | 50.0 | 4.53e-01 | 79.5% | 63.8% |
| 3273867 | 221.1.1.4 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 | 0.61 | 46.0 | 4.47e-01 | 79.5% | 84.7% |
| 3516581 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 48.0 | 4.56e-01 | 87.2% | 80.0% |
| 4538536 | 2006.1.1.37 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › S6PP+Hydrolase_3 | 0.61 | 53.0 | 3.67e-01 | 100.0% | 53.1% |
| 3754085 | 221.1.1.4 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 | 0.60 | 44.0 | 4.06e-01 | 79.5% | 72.1% |
| 3264411 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.59 | 44.0 | 4.36e-01 | 78.2% | 90.0% |
| 4963717 | 322.1.1.1 ↗ | a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr | 0.58 | 48.0 | 4.69e-01 | 96.2% | 92.2% |
| 3588312 | 322.1.1.1 ↗ | a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr | 0.58 | 49.0 | 4.76e-01 | 97.4% | 97.7% |
| 1290736 | 304.120.1.6 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer | 0.58 | 45.0 | 4.60e-01 | 100.0% | 89.2% |
| 4022379 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.57 | 42.0 | 3.45e-01 | 79.5% | 89.3% |
| 3374000 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.57 | 46.0 | 4.21e-01 | 89.7% | 86.7% |
| 3978801 | 322.1.1.1 ↗ | a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr | 0.57 | 47.0 | 4.68e-01 | 97.4% | 95.3% |
| 1107972 | 304.26.1.2 ↗ | a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Ykof | 0.56 | 46.0 | 4.31e-01 | 100.0% | 72.4% |
| 4568147 | 322.1.1.1 ↗ | a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr | 0.56 | 46.0 | 4.47e-01 | 96.2% | 91.0% |
| 3600927 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 43.0 | 3.82e-01 | 87.2% | 68.3% |
| 4990 | 322.1.1.1 ↗ | a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr | 0.54 | 46.0 | 4.51e-01 | 97.4% | 94.0% |
| 3972149 | 322.1.1.1 ↗ | a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr | 0.54 | 45.0 | 4.52e-01 | 97.4% | 100.0% |
| 3953647 | 304.26.1.1 ↗ | a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP | 0.54 | 44.0 | 4.22e-01 | 100.0% | 76.8% |
| 4026547 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 42.0 | 2.81e-01 | 85.9% | 40.3% |
| 3594156 | 304.8.1.49 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › R1_ABCA1 | 0.53 | 42.0 | 4.26e-01 | 100.0% | 92.0% |
| 5049019 | 304.26.1.1 ↗ | a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP | 0.53 | 45.0 | 4.12e-01 | 100.0% | 71.8% |
| 4403519 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 38.0 | 2.99e-01 | 80.8% | 35.3% |
| 5035636 | 304.26.1.1 ↗ | a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP | 0.53 | 45.0 | 4.16e-01 | 100.0% | 75.0% |
| 4943395 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 39.0 | 3.02e-01 | 82.1% | 35.9% |
| 3589150 | 2498.1.1.7 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M3,Peptidase_M3_N | 0.52 | 40.0 | 2.38e-01 | 83.3% | 54.4% |
| 3957892 | 2002.1.1.434 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MS_TIM-barrel, MSG_insertion, MS_C | 0.52 | 35.0 | 2.14e-01 | 70.5% | 18.5% |
| 5065071 | 210.1.3.5 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 | 0.52 | 43.0 | 3.29e-01 | 98.7% | 92.9% |
| 3374701 | 1.1.2.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 | 0.51 | 45.0 | 3.49e-01 | 100.0% | 62.8% |
| 4977475 | 210.1.3.0 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases | 0.51 | 43.0 | 3.29e-01 | 100.0% | 92.9% |
| 4934171 | 876.1.1.0 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin | 0.51 | 40.0 | 3.43e-01 | 89.7% | 57.1% |
| 3439148 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.51 | 40.0 | 3.09e-01 | 84.6% | 38.9% |
| 3996298 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.50 | 41.0 | 4.12e-01 | 100.0% | 91.3% |