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MF042360.1__ARV76737.1__PHABIO_106__00106

Bact-Vir

MF042360.1__ARV76737.1__PHABIO_106__00106

Identity

Accession:
MF042360 ↗
Kingdom:
phage

Quality

74.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Phabiovirus› Pseudomonas_phage_Phabio

TaxID: 2006668

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 76-299
PDB
Domain cluster: rep: MW735835.1__QTH80358.1__PA10_00158__00158__D71-281
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vxxA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.62 33.0 3.75e-01 92.0% 66.3%
2fzfA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.55 31.0 3.71e-01 90.6% 80.0%
4rm7A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.55 33.0 4.14e-01 87.5% 95.0%
3m9vA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.53 36.0 4.28e-01 87.9% 97.5%
2fp1B00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.53 29.0 3.37e-01 96.0% 70.7%
6o7uc01 1.20.120.610 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase 0.53 29.0 3.11e-01 80.8% 59.5%
5iduC03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.53 33.0 3.80e-01 88.4% 85.5%
1r0dA00 1.20.1410.10 Mainly Alpha › Up-down Bundle › I/LWEQ domain › I/LWEQ domain 0.51 37.0 3.93e-01 92.9% 84.5%
3ggyA00 1.20.1260.60 Mainly Alpha › Up-down Bundle › Ferritin › Vacuolar protein sorting-associated protein Ist1 0.51 31.0 3.35e-01 89.3% 69.4%
3ko2A00 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.50 31.0 3.57e-01 91.1% 83.2%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3607857 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.67 29.0 4.31e-01 83.0% 91.0%
4949473 5086.1.1.230 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › ATP-synt_D 0.57 31.0 3.19e-01 80.4% 52.3%
3663850 708.1.1.8 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FAR1 0.55 21.0 3.18e-01 81.2% 80.0%
5027304 3926.1.1.1 ↗ alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.54 29.0 3.23e-01 72.3% 62.3%
3676212 708.1.1.8 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FAR1 0.54 26.0 3.47e-01 81.7% 84.3%
4598415 3926.1.1.1 ↗ alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.53 29.0 3.06e-01 72.8% 55.5%
3866648 174.1.1.43 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › CD20 0.52 34.0 3.99e-01 88.4% 91.3%
3952795 3892.1.1.1 ↗ alpha bundles › Transhydrogeanse domain II › Transhydrogeanse domain II › Transhydrogeanse domain II › PNTB 0.52 42.0 3.94e-01 89.3% 68.6%
3676562 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.51 26.0 2.71e-01 84.4% 47.8%
3361214 4006.1.1.1 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.50 28.0 3.59e-01 81.2% 93.1%
D2 medium residues 1-75
PDB
Domain cluster: rep: MW879341.1__QXO11119.1__pEaSNUABM54_00293__00293__D1-70_267-286
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.71 36.0 4.06e-01 81.3% 63.2%
3dmqA07 3.30.360.80 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › 0.59 49.0 4.96e-01 98.7% 93.2%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.54 30.0 3.18e-01 77.3% 58.0%
2hlzA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.53 47.0 3.16e-01 100.0% 89.2%
1xtfA00 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.52 38.0 2.44e-01 80.0% 85.9%
2mhdA00 2.40.128.370 Mainly Beta › Beta Barrel › Lipocalin › 0.51 40.0 3.60e-01 89.3% 90.0%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.50 30.0 3.53e-01 90.7% 90.0%
5c68A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.50 32.0 2.88e-01 88.0% 44.0%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3764740 109.4.1.1399 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Tuberin, DUF3384 0.57 30.0 1.99e-01 74.7% 11.0%
3975793 4312.1.1.5 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › RelE 0.57 35.0 3.25e-01 77.3% 48.4%
3942405 4312.1.1.5 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › RelE 0.55 34.0 3.22e-01 80.0% 49.5%
3723770 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.55 40.0 3.83e-01 82.7% 67.1%
3737618 327.11.2.3 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_6 0.53 31.0 2.71e-01 84.0% 32.6%
3450480 5.1.4.297 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, NBCH_WD40 0.52 41.0 3.02e-01 92.0% 82.9%
3719449 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 42.0 2.48e-01 97.3% 38.1%
3597535 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 30.0 2.33e-01 80.0% 22.6%
3932457 2005.1.1.7 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d 0.51 39.0 2.68e-01 85.3% 83.8%
4322502 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.51 44.0 2.78e-01 100.0% 94.2%
3696432 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.51 36.0 2.80e-01 78.7% 66.7%
None — 0.50 40.0 2.41e-01 89.3% 67.8%
3280341 211.1.1.24 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Ble-like_N 0.50 28.0 3.20e-01 77.3% 76.0%