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MF042360.1__ARV77008.1__PHABIO_377__00377
Bact-VirMF042360.1__ARV77008.1__PHABIO_377__00377
Identity
- Accession:
- MF042360 ↗
- Kingdom:
- phage
Quality
70.5
mean pLDDT
Taxonomy
TaxID: 2006668
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 7-59
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ptsB02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.80 | 55.0 | 3.74e-01 | 71.7% | 78.0% |
| 2oh3A01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.80 | 56.0 | 4.03e-01 | 73.6% | 29.9% |
| 1gwcA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.77 | 54.0 | 3.90e-01 | 73.6% | 31.2% |
| 3bvoA02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.76 | 58.0 | 4.87e-01 | 81.1% | 60.5% |
| 2f93B00 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.76 | 56.0 | 5.74e-01 | 79.2% | 88.2% |
| 3oo3A00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.74 | 64.0 | 3.84e-01 | 98.1% | 21.8% |
| 8be0A01 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.73 | 50.0 | 3.40e-01 | 71.7% | 80.1% |
| 2pohA02 | 6.10.140.940 | Special › Helix non-globular › Helix Hairpins › | 0.73 | 52.0 | 4.60e-01 | 75.5% | 58.4% |
| 1ly1A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.67 | 54.0 | 3.94e-01 | 90.6% | 44.7% |
| 2lpeA01 | 6.10.140.1120 | Special › Helix non-globular › Helix Hairpins › | 0.67 | 45.0 | 4.04e-01 | 71.7% | 62.8% |
| 3ig5A04 | 1.10.8.960 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.58 | 43.0 | 4.03e-01 | 79.2% | 92.4% |
| 2ndpA00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.56 | 43.0 | 3.51e-01 | 84.9% | 54.5% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3976663 | 3812.1.1.1 ↗ | alpha bundles › Type III secretion protein YscE › Type III secretion protein YscE › Type III secretion protein YscE › T3SS_needle_E | 0.88 | 63.0 | 5.87e-01 | 75.5% | 67.7% |
| 3795106 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.85 | 60.0 | 4.69e-01 | 73.6% | 41.0% |
| 4397104 | 605.1.1.4 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 | 0.83 | 59.0 | 5.26e-01 | 75.5% | 58.7% |
| 3296414 | 192.29.1.168 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF641 | 0.83 | 59.0 | 5.36e-01 | 75.5% | 65.7% |
| 4803705 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.81 | 57.0 | 5.27e-01 | 73.6% | 66.7% |
| 4573348 | 4044.1.1.0 ↗ | alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins | 0.79 | 56.0 | 5.26e-01 | 75.5% | 66.2% |
| 3492075 | 3729.1.1.1 ↗ | alpha arrays › Legumain prodomain › Legumain prodomain › Legumain prodomain › Legum_prodom | 0.77 | 66.0 | 4.93e-01 | 92.5% | 97.6% |
| 3347379 | 3470.1.1.26 ↗ | extended segments › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › DUF543 | 0.74 | 55.0 | 5.15e-01 | 79.2% | 67.7% |
| 3714873 | 4.1.1.4 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW,Ribosomal_L27e | 0.73 | 54.0 | 3.88e-01 | 79.2% | 80.7% |
| 3791242 | 3729.1.1.1 ↗ | alpha arrays › Legumain prodomain › Legumain prodomain › Legumain prodomain › Legum_prodom | 0.73 | 66.0 | 4.66e-01 | 98.1% | 85.3% |
| 1687881 | 2484.1.1.41 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › AnmK | 0.70 | 56.0 | 3.28e-01 | 88.7% | 19.3% |
| 3173378 | 109.4.1.338 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RIC1 | 0.65 | 59.0 | 3.75e-01 | 100.0% | 68.6% |
| 3738329 | 109.4.1.554 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Neurochondrin | 0.64 | 55.0 | 3.16e-01 | 92.5% | 20.5% |
| 3208028 | 109.4.1.1594 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPP2R1A-like_HEAT, VPS15-like_hel | 0.63 | 43.0 | 2.57e-01 | 71.7% | 17.0% |
| 3392333 | 3998.1.1.1 ↗ | alpha arrays › Peptidase inhibitors family I29 › Peptidase inhibitors family I29 › Peptidase inhibitors family I29 › Inhibitor_I29 | 0.59 | 45.0 | 4.32e-01 | 81.1% | 76.7% |
| 3645380 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.51 | 40.0 | 2.79e-01 | 88.7% | 49.7% |