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MF042360.1__ARV77091.1__PHABIO_463__00460

Bact-Vir

MF042360.1__ARV77091.1__PHABIO_463__00460

Identity

Accession:
MF042360 ↗
Kingdom:
phage

Quality

37.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Phabiovirus› Pseudomonas_phage_Phabio

TaxID: 2006668

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 59-154
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ld1A00 2.60.450.20 Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › 0.75 39.0 3.26e-01 87.5% 31.2%
3eb8B01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.67 38.0 4.74e-01 87.5% 90.2%
2ogqA01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.66 41.0 3.69e-01 100.0% 46.8%
2qgyB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.57 41.0 3.71e-01 77.1% 83.2%
3udfA03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 39.0 4.02e-01 74.0% 89.5%
2d0bA01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.54 37.0 3.85e-01 99.0% 75.3%
7mhwA01 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.54 34.0 3.51e-01 75.0% 67.4%
4c5wA01 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.54 39.0 3.95e-01 76.0% 97.9%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 36.0 3.76e-01 76.0% 77.0%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.52 35.0 3.91e-01 74.0% 95.7%
1avaA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 30.0 3.83e-01 74.0% 96.6%
2aq5A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 38.0 2.65e-01 78.1% 31.0%
4h5iB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 38.0 2.62e-01 78.1% 25.2%
2rf4E02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 37.0 3.97e-01 77.1% 91.6%
2w18A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 37.0 2.63e-01 76.0% 28.4%
3aihB01 2.70.130.10 Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain 0.51 37.0 3.59e-01 75.0% 94.4%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.51 32.0 3.61e-01 90.6% 83.3%
4gq1A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 41.0 2.80e-01 86.5% 26.8%
1flgA00 2.140.10.10 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Quinoprotein alcohol dehydrogenase-like superfamily 0.51 37.0 2.34e-01 78.1% 30.4%
3ow8C00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 37.0 2.68e-01 79.2% 28.7%
4cvbA00 2.140.10.10 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Quinoprotein alcohol dehydrogenase-like superfamily 0.50 37.0 2.38e-01 80.2% 31.0%
7uhyA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 36.0 2.60e-01 77.1% 32.3%
2ymsC00 2.40.10.480 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.50 37.0 4.22e-01 80.2% 100.0%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3993048 292.2.1.1 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.77 37.0 3.53e-01 78.1% 40.9%
3435779 809.2.1.0 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.77 32.0 4.23e-01 72.9% 69.1%
3546306 292.2.1.1 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.76 37.0 3.76e-01 77.1% 48.4%
4441857 3347.1.1.6 ↗ beta meanders › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › RHS_repeat, DUF6531, TEN_YD-shell 0.73 40.0 2.58e-01 86.5% 13.1%
3384946 5.1.10.7 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › RCC1, RCC1_2 0.63 33.0 2.94e-01 75.0% 37.8%
3536576 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.61 35.0 3.74e-01 87.5% 63.5%
68497 809.2.1.1 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like › PepSY_like 0.60 34.0 4.51e-01 78.1% 100.0%
3386275 809.2.1.1 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like › PepSY_like 0.60 35.0 4.49e-01 83.3% 96.7%
3352624 5.1.10.7 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › RCC1, RCC1_2 0.58 34.0 3.86e-01 74.0% 76.0%
3947013 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.55 38.0 3.93e-01 70.8% 80.0%
4076042 5.1.5.64 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DCAF17 0.55 48.0 3.11e-01 96.9% 32.7%
3634343 5.1.5.93 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_EMC1_N 0.55 41.0 2.62e-01 79.2% 21.0%
4029617 5.1.11.39 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › DUF7899 0.55 40.0 2.57e-01 77.1% 18.7%
3838251 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 43.0 3.07e-01 86.5% 33.1%
3230195 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 41.0 2.80e-01 82.3% 37.7%
1141859 5.1.10.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › DUF6849 0.53 35.0 3.93e-01 74.0% 91.7%
5026087 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.53 39.0 2.59e-01 78.1% 26.4%
3493793 5.1.4.258 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1, RCC1_2 0.52 38.0 2.80e-01 76.0% 29.7%
3707019 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 41.0 2.72e-01 84.4% 24.6%
1837476 331.1.1.6 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 0.52 32.0 3.71e-01 90.6% 88.1%
3783578 5.1.5.10 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › ANAPC4_WD40 0.51 36.0 2.64e-01 76.0% 24.9%
4024970 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.51 38.0 2.49e-01 78.1% 19.1%
3582293 5.1.4.158 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_HPS5 0.51 41.0 2.68e-01 87.5% 23.2%
3593467 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 40.0 2.74e-01 85.4% 30.1%
3250651 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 39.0 2.76e-01 83.3% 27.2%
3601457 5.1.4.5 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,CAF1C_H4-bd 0.51 40.0 2.59e-01 84.4% 27.5%
3514791 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 38.0 2.58e-01 80.2% 29.3%
4382843 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 39.0 2.72e-01 84.4% 25.5%
3510696 5.1.4.149 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WDR54 0.50 39.0 2.95e-01 82.3% 84.4%
4561895 5.1.3.19 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.50 38.0 2.99e-01 81.2% 47.1%
4773067 5.1.4.40 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.50 37.0 4.22e-01 80.2% 100.0%
3927439 5.1.3.19 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.50 38.0 3.16e-01 81.2% 56.0%
D2 medium residues 516-573
PDB
D3 medium residues 636-701
PDB