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MF042361.1__ARV77166.1__SKUL_67__00067

Bact-Vir

MF042361.1__ARV77166.1__SKUL_67__00067

Identity

Accession:
MF042361 ↗
Kingdom:
phage

Quality

70.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-72
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gu3A02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.78 47.0 4.44e-01 84.3% 49.2%
5ywwA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.63 51.0 3.42e-01 90.2% 24.1%
3a9gA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.62 52.0 3.17e-01 94.1% 28.1%
3ly7A01 3.40.50.11830 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.61 51.0 3.71e-01 100.0% 44.7%
1burS00 3.30.190.10 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit 0.61 47.0 3.62e-01 86.3% 65.9%
7px8A01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.61 47.0 3.00e-01 86.3% 29.1%
3hdjA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.61 46.0 3.44e-01 100.0% 30.7%
1tj6A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 45.0 3.65e-01 100.0% 39.1%
1cruA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.59 49.0 2.88e-01 94.1% 25.4%
8fkmA01 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.58 45.0 3.28e-01 90.2% 30.5%
2p3hA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.58 43.0 3.58e-01 84.3% 48.0%
2o95B00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.56 42.0 3.00e-01 84.3% 26.1%
4qdgA02 2.60.40.2090 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 47.0 3.55e-01 100.0% 80.0%
2knoA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.56 41.0 3.22e-01 80.4% 40.0%
3px5A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 47.0 3.69e-01 98.0% 81.0%
1bqgA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 49.0 3.56e-01 98.0% 63.8%
3ijlA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 47.0 3.76e-01 98.0% 83.3%
3ugvA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 47.0 3.57e-01 98.0% 75.4%
2zadA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 47.0 3.68e-01 98.0% 78.9%
2oztA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 48.0 3.70e-01 100.0% 65.3%
4q0yA00 2.60.40.4400 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 43.0 3.24e-01 90.2% 34.4%
3htxA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 43.0 3.90e-01 92.2% 65.8%
3ik4B01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 46.0 3.60e-01 98.0% 78.8%
5azpA02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.54 42.0 3.75e-01 90.2% 66.7%
1tkkA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 45.0 3.54e-01 98.0% 81.7%
2chrA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 45.0 3.50e-01 100.0% 72.4%
4it1B01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 44.0 3.29e-01 100.0% 53.6%
1gesA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.53 40.0 3.12e-01 86.3% 37.2%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 44.0 3.58e-01 100.0% 54.6%
3vfcA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 46.0 3.35e-01 100.0% 53.0%
2hzgB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 43.0 3.23e-01 96.1% 71.3%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.52 42.0 3.74e-01 100.0% 62.7%
2rajA02 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.51 41.0 3.27e-01 100.0% 47.6%
3jvaA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 42.0 3.38e-01 98.0% 81.6%
3loyA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 39.0 3.24e-01 96.1% 45.6%
6kghA02 3.30.450.330 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.51 41.0 3.04e-01 96.1% 42.2%
1gd5A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.51 38.0 2.98e-01 100.0% 34.6%
2b5iB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 37.0 3.22e-01 86.3% 72.3%
2i99A01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.50 43.0 3.14e-01 100.0% 34.0%
1yc9A02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.50 38.0 3.37e-01 88.2% 74.7%
3ci0J01 3.10.610.10 Alpha Beta › Roll › Pili subunits › GSPII I/J protein-like 0.50 39.0 3.20e-01 90.2% 50.0%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4504291 375.1.1.29 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › SoxD 0.84 56.0 5.34e-01 90.2% 60.0%
3647546 4.26.1.0 beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 0.78 58.0 5.64e-01 84.3% 72.7%
3452042 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.75 56.0 5.48e-01 84.3% 72.7%
3629455 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.73 57.0 3.88e-01 90.2% 23.2%
4616279 375.1.1.95 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_13 0.71 58.0 5.40e-01 100.0% 72.3%
4965032 375.1.1.343 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7835 0.69 51.0 4.98e-01 84.3% 72.7%
3983036 2484.1.1.119 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1 0.69 54.0 5.02e-01 96.1% 67.7%
5072764 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 46.0 4.73e-01 82.4% 74.0%
3518515 7579.1.1.0 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.67 58.0 3.28e-01 100.0% 17.5%
4256745 4292.2.1.0 a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.65 56.0 4.15e-01 96.1% 70.8%
3999173 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 49.0 4.04e-01 86.3% 44.2%
3916215 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.64 56.0 3.33e-01 98.0% 18.6%
3496098 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.62 54.0 3.86e-01 100.0% 85.2%
3594831 252.1.1.0 a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD 0.62 49.0 5.21e-01 98.0% 100.0%
3995314 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 45.0 3.40e-01 98.0% 30.4%
3739960 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.61 43.0 3.10e-01 82.4% 26.2%
3596890 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 52.0 3.91e-01 100.0% 44.4%
3865029 4292.2.1.0 a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.60 53.0 4.48e-01 100.0% 62.4%
3953561 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 44.0 4.30e-01 78.4% 78.2%
3621025 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.60 54.0 4.95e-01 100.0% 81.5%
3940986 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.60 50.0 4.49e-01 100.0% 68.0%
3581093 4292.2.1.0 a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.59 53.0 4.54e-01 100.0% 67.5%
4949158 244.2.1.1 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Pyr_redox_dim 0.59 44.0 2.90e-01 84.3% 17.7%
3665649 3692.1.1.0 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain 0.59 47.0 3.69e-01 94.1% 41.3%
3935471 4292.1.1.0 a+b two layers › FlaG-like › FlaG-related › FlaG-related 0.59 51.0 4.33e-01 98.0% 61.2%
4196609 3692.1.1.0 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain 0.59 49.0 3.74e-01 98.0% 40.0%
3707082 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 45.0 4.06e-01 84.3% 61.4%
3925496 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 45.0 3.86e-01 90.2% 51.1%
1954221 2.26.1.1 beta barrels › OB-fold › Arcadin-1 › Arcadin-1 › Arcadin_1 0.58 46.0 4.18e-01 100.0% 64.0%
3927652 2484.5.1.0 mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase 0.58 42.0 3.46e-01 100.0% 39.1%
3190787 210.2.1.3 a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C_2 0.57 44.0 2.80e-01 90.2% 72.0%
3942598 2484.1.1.219 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF29688 0.57 48.0 3.20e-01 100.0% 42.2%
4131098 218.1.1.0 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.56 49.0 3.95e-01 98.0% 90.0%
4444614 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.56 46.0 4.07e-01 96.1% 67.5%
3801015 5.1.4.94 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Det1 0.56 44.0 2.65e-01 100.0% 10.8%
4149725 218.1.1.1 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.55 47.0 3.63e-01 98.0% 75.0%
4990953 3692.1.1.0 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain 0.55 46.0 3.54e-01 96.1% 41.1%
3990973 2484.1.1.107 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1595 0.55 48.0 3.42e-01 100.0% 48.8%
5052424 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.55 45.0 3.28e-01 92.2% 66.4%
4081551 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.55 44.0 3.13e-01 92.2% 31.7%
3499266 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 45.0 3.44e-01 94.1% 95.1%
4946414 301.13.1.0 a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain 0.55 45.0 3.55e-01 100.0% 46.3%
3429522 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 47.0 2.84e-01 98.0% 94.4%
3458064 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.54 43.0 4.32e-01 100.0% 90.6%
4934684 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.54 45.0 3.53e-01 98.0% 65.8%
4300310 3016.1.1.11 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › SelA 0.53 39.0 3.22e-01 82.4% 58.7%
3254982 295.1.1.4 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.53 44.0 4.06e-01 100.0% 80.0%
4969758 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.53 39.0 3.31e-01 86.3% 46.7%
4595466 3572.1.1.2 a+b complex topology › Cascade subunit Csa5 › Cascade subunit Csa5 › Cascade subunit Csa5 › Cas_Csa5 0.53 44.0 3.38e-01 100.0% 40.0%
4018760 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.52 46.0 4.06e-01 100.0% 70.7%
3266842 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.52 42.0 3.32e-01 100.0% 41.6%
3392707 3692.1.1.0 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain 0.52 44.0 3.17e-01 98.0% 38.1%
3396324 295.1.1.4 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.52 41.0 3.94e-01 100.0% 76.9%
5024800 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.52 40.0 3.13e-01 88.2% 50.8%
None 0.52 43.0 3.11e-01 100.0% 33.5%
3485727 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.50 41.0 3.51e-01 100.0% 63.2%
3736612 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.50 40.0 3.52e-01 96.1% 60.0%
D2 high residues 79-139
PDB