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MF063068.1__ARV77227.1__NOXIFER_56__00056

Bact-Vir

MF063068.1__ARV77227.1__NOXIFER_56__00056

Identity

Accession:
MF063068 ↗
Kingdom:
phage

Quality

66.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Noxifervirus› Pseudomonas_phage_Noxifer

TaxID: 2006684

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 23-79
PDB
D2 high residues 83-159
PDB
Domain cluster: rep: EU197055.1__ABY62951.1__201phi2-1p119__00117__D89-156
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lp6A00 2.40.10.190 Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 0.56 42.0 4.05e-01 81.8% 98.9%
4qxaB00 2.30.29.230 Mainly Beta › Roll › PH-domain like › 0.56 42.0 3.52e-01 84.4% 53.1%
2d9uA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 37.0 3.84e-01 70.1% 73.0%
1rfmA02 3.30.1370.60 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, NADPH binding domain 0.54 45.0 3.44e-01 98.7% 71.1%
1p32B00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.53 42.0 3.34e-01 88.3% 57.9%
2dlgA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 34.0 3.45e-01 85.7% 63.7%
6hxiA01 3.30.470.110 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › 0.53 46.0 3.46e-01 100.0% 76.4%
2d8iA01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.52 38.0 3.66e-01 84.4% 67.0%
1t9hA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 39.0 4.07e-01 83.1% 86.3%
2ia1A01 3.30.500.20 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › BH3703-like domains 0.52 42.0 3.74e-01 92.2% 79.0%
2dmcA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 34.0 3.45e-01 85.7% 68.9%
6tdyD01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.51 38.0 3.91e-01 81.8% 97.3%
1g2rA00 3.30.1230.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › YlxR-like 0.51 37.0 3.49e-01 89.6% 63.8%
1v5mA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 36.0 3.08e-01 76.6% 83.1%
4eq8A00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.50 45.0 3.57e-01 100.0% 64.6%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3810572 2003.1.5.26 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_28 0.64 51.0 3.18e-01 84.4% 62.7%
3997676 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 39.0 3.77e-01 81.8% 52.2%
5028774 206.1.3.21 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.63 54.0 4.11e-01 96.1% 71.4%
3919300 206.1.3.42 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › PPIP5K2_N 0.63 55.0 3.79e-01 98.7% 61.5%
3778257 4.1.1.24 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L14e 0.61 47.0 3.86e-01 81.8% 67.1%
3619202 10.10.1.0 ↗ beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) 0.59 37.0 3.60e-01 84.4% 57.6%
4007507 223.1.1.3 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.59 47.0 3.59e-01 90.9% 68.7%
3704344 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.57 39.0 4.11e-01 71.4% 89.2%
3388887 4.8.1.2 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.56 37.0 3.96e-01 70.1% 81.5%
3482202 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.56 38.0 4.34e-01 93.5% 100.0%
3471771 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 38.0 4.28e-01 88.3% 100.0%
3663326 292.2.1.1 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.55 44.0 4.01e-01 89.6% 76.2%
3518991 284.1.3.4 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › CCTL2_WNK 0.54 37.0 3.80e-01 71.4% 100.0%
3508085 4.8.1.2 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.54 36.0 3.84e-01 70.1% 81.5%
3502043 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.54 38.0 4.12e-01 72.7% 95.0%
3691862 206.1.3.21 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.53 46.0 3.20e-01 100.0% 74.4%
3801941 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.53 38.0 3.38e-01 90.9% 51.3%
2409295 3943.1.1.3 ↗ beta sandwiches › Flagellar hook-associated protein 1 beta-sandwich domains › Flagellar hook-associated protein 1 beta-sandwich domains › Flagellar hook-associated protein 1 beta-sandwich domains › flgK_1st_1 0.53 47.0 4.44e-01 100.0% 96.8%
5015458 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.52 38.0 3.79e-01 100.0% 77.5%
5054339 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.52 34.0 3.53e-01 92.2% 72.9%
3236163 1.1.7.24 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 0.52 39.0 3.63e-01 84.4% 89.5%
3969508 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.51 42.0 3.29e-01 98.7% 41.2%
5007131 1.1.7.28 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.51 44.0 4.11e-01 96.1% 100.0%
5011662 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.51 44.0 3.57e-01 96.1% 94.7%
4636885 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.51 38.0 3.90e-01 81.8% 97.3%
3489053 7.1.1.0 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain 0.51 39.0 3.34e-01 81.8% 83.2%
5012108 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 44.0 2.96e-01 97.4% 24.9%
3823073 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.51 43.0 2.89e-01 100.0% 97.7%