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MF063068.1__ARV77250.1__NOXIFER_79__00079
Bact-VirMF063068.1__ARV77250.1__NOXIFER_79__00079
Identity
- Accession:
- MF063068 ↗
- Kingdom:
- phage
Quality
82.6
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Chimalliviridae›
Noxifervirus›
Pseudomonas_phage_Noxifer
TaxID: 2006684
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 30-159_211-233
Domain cluster:
rep: MG711460.1__AUV61564.1__X__00052__D5-183
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6ziwI01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.60 | 28.0 | 3.67e-01 | 98.7% | 80.8% |
| 1uw1A00 | 3.10.450.210 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 22.0 | 3.29e-01 | 97.4% | 76.1% |
| 1uebA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 23.0 | 3.35e-01 | 96.7% | 84.1% |
| 2qm3A02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 42.0 | 3.72e-01 | 83.7% | 83.6% |
| 1yuaA02 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.52 | 19.0 | 2.80e-01 | 97.4% | 75.9% |
| 6xysA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 38.0 | 2.71e-01 | 79.7% | 84.1% |
| 1a1xA00 | 2.40.15.10 | Mainly Beta › Beta Barrel › Proto-oncogene - Oncogene Product P14tcl1 › TCL1/MTCP1 | 0.50 | 30.0 | 3.54e-01 | 98.7% | 84.9% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4883825 | 1.1.13.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tailD1 | 0.55 | 33.0 | 4.06e-01 | 97.4% | 97.8% |
| 5020278 | 3012.1.1.19 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › PF27313 | 0.52 | 28.0 | 3.16e-01 | 96.7% | 65.2% |
| 4384643 | 873.1.1.12 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › PF27313 | 0.50 | 29.0 | 3.04e-01 | 96.1% | 60.0% |
D2
medium
residues 160-210
D3
medium
residues 237-329
Domain cluster:
rep: LC765218.1__BEG72621.1__RVBP21_2490__00249__D14-41_62-82_96-115
CATH (2)
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3974480 | 3454.1.1.0 ↗ | beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like | 0.59 | 27.0 | 3.16e-01 | 97.8% | 58.5% |
| 185450 | 3454.1.1.2 ↗ | beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like › T2SSC | 0.58 | 26.0 | 3.05e-01 | 97.8% | 56.9% |
| 4337720 | 3454.1.1.2 ↗ | beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like › T2SSC | 0.57 | 27.0 | 3.14e-01 | 97.8% | 61.5% |
| 3947431 | 3454.1.1.2 ↗ | beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like › T2SSC | 0.56 | 27.0 | 3.11e-01 | 97.8% | 61.5% |
| 3673136 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 34.0 | 3.01e-01 | 84.9% | 40.7% |
| 5044263 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 27.0 | 3.11e-01 | 97.8% | 64.3% |
| None | — | 0.53 | 37.0 | 2.67e-01 | 96.8% | 22.7% | |
| 3496925 | 7568.1.1.0 ↗ | a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain | 0.50 | 32.0 | 2.36e-01 | 97.8% | 24.6% |
| 5043316 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.50 | 42.0 | 3.64e-01 | 95.7% | 80.0% |
D4
medium
residues 330-445
Domain cluster:
rep: MF063068.1__ARV77249.1__NOXIFER_78__00078__D112-221
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3qeeB00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.52 | 41.0 | 3.13e-01 | 86.2% | 95.7% |
| 1zxtA01 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.52 | 29.0 | 3.61e-01 | 94.0% | 100.0% |
| 1eqtA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.51 | 29.0 | 3.51e-01 | 94.0% | 92.5% |
| 1nr4C00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.50 | 29.0 | 3.49e-01 | 94.0% | 93.9% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3220037 | 209.1.1.0 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like | 0.57 | 38.0 | 3.72e-01 | 85.3% | 63.2% |
| 3243974 | 209.1.1.0 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like | 0.54 | 35.0 | 3.47e-01 | 83.6% | 61.6% |
| 4136524 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.52 | 44.0 | 3.56e-01 | 95.7% | 85.8% |