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MF063068.1__ARV77298.1__NOXIFER_129__00129
Bact-VirMF063068.1__ARV77298.1__NOXIFER_129__00129
Identity
- Accession:
- MF063068 ↗
- Kingdom:
- phage
Quality
89.9
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Chimalliviridae›
Noxifervirus›
Pseudomonas_phage_Noxifer
TaxID: 2006684
Cluster
View cluster (47 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-64
Domain cluster:
representative
CATH (56)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2fkcA01 | 3.40.1350.40 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.76 | 54.0 | 4.35e-01 | 100.0% | 40.0% |
| 4da5A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.72 | 64.0 | 5.70e-01 | 100.0% | 73.5% |
| 5xyiY00 | 3.30.70.3370 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.66 | 46.0 | 3.80e-01 | 86.2% | 40.0% |
| 3tdgA01 | 3.10.450.520 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.66 | 49.0 | 4.77e-01 | 100.0% | 74.2% |
| 4i8oA01 | 3.30.310.240 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Bacterial toxin RNase RnlA/LsoA, N-terminal domain | 0.65 | 44.0 | 3.86e-01 | 100.0% | 47.2% |
| 2xe4A02 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.64 | 43.0 | 2.67e-01 | 100.0% | 11.6% |
| 1uebA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 50.0 | 4.94e-01 | 100.0% | 81.0% |
| 4nzrM02 | 2.160.20.180 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.63 | 51.0 | 3.61e-01 | 89.7% | 44.0% |
| 2qkdA03 | 2.20.25.420 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain | 0.63 | 46.0 | 4.86e-01 | 98.3% | 90.2% |
| 4id2A00 | 2.40.128.510 | Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 | 0.63 | 51.0 | 4.04e-01 | 100.0% | 41.2% |
| 1x3zA04 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.63 | 49.0 | 5.06e-01 | 100.0% | 96.3% |
| 6s8zA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 49.0 | 4.84e-01 | 100.0% | 82.3% |
| 7jrmA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 50.0 | 4.68e-01 | 100.0% | 73.0% |
| 3a76A01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.61 | 52.0 | 4.01e-01 | 100.0% | 76.3% |
| 3mcrA00 | 3.30.460.80 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit | 0.61 | 49.0 | 3.72e-01 | 94.8% | 37.0% |
| 2mnjB00 | 2.60.40.4160 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.61 | 42.0 | 3.66e-01 | 72.4% | 93.2% |
| 2rsxA00 | 3.10.450.420 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 52.0 | 3.85e-01 | 100.0% | 83.0% |
| 3lq6A02 | 2.40.30.120 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses | 0.60 | 41.0 | 3.34e-01 | 72.4% | 81.6% |
| 1qypA00 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.60 | 41.0 | 4.14e-01 | 98.3% | 75.4% |
| 3a5zB01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 46.0 | 4.56e-01 | 100.0% | 81.0% |
| 3p0cA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.59 | 38.0 | 3.20e-01 | 74.1% | 34.2% |
| 2oc3A00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.59 | 50.0 | 3.25e-01 | 96.6% | 30.1% |
| 2lmcB00 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.59 | 38.0 | 3.81e-01 | 96.6% | 62.3% |
| 2qkdA01 | 2.20.25.420 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain | 0.59 | 42.0 | 4.44e-01 | 98.3% | 91.7% |
| 2i99A01 | 3.30.1780.10 | Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 | 0.59 | 44.0 | 3.35e-01 | 82.8% | 40.0% |
| 4o8sA01 | 3.10.450.620 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › JHP933, nucleotidyltransferase-like core domain | 0.58 | 42.0 | 3.38e-01 | 100.0% | 36.8% |
| 1tp6A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 47.0 | 3.88e-01 | 100.0% | 81.0% |
| 3b77A01 | 2.30.29.50 | Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain | 0.58 | 49.0 | 4.18e-01 | 100.0% | 95.0% |
| 2awnC03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 38.0 | 3.87e-01 | 100.0% | 69.0% |
| 7arcC01 | 3.30.460.80 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit | 0.58 | 46.0 | 3.66e-01 | 94.8% | 41.5% |
| 7xr9E01 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.58 | 48.0 | 3.46e-01 | 100.0% | 40.6% |
| 3b7cA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 46.0 | 3.82e-01 | 100.0% | 80.8% |
| 2qm4A01 | 2.170.210.10 | Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal | 0.57 | 47.0 | 3.68e-01 | 100.0% | 69.2% |
| 2k2jA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.57 | 49.0 | 3.95e-01 | 100.0% | 75.2% |
| 1nnvA01 | 3.10.450.140 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › dsDNA mimic, putative | 0.56 | 48.0 | 4.03e-01 | 100.0% | 56.0% |
| 2byoA00 | 2.50.20.20 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › | 0.56 | 47.0 | 3.46e-01 | 100.0% | 80.9% |
| 4f0qA02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.56 | 41.0 | 2.99e-01 | 100.0% | 25.5% |
| 2i1yA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.56 | 46.0 | 3.05e-01 | 100.0% | 29.6% |
| 3l4gC04 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.55 | 40.0 | 2.71e-01 | 100.0% | 17.5% |
| 8jx6A02 | 2.30.30.780 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 44.0 | 3.86e-01 | 100.0% | 55.3% |
| 2ar5A00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.55 | 38.0 | 3.11e-01 | 74.1% | 36.8% |
| 2owpA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 44.0 | 3.63e-01 | 100.0% | 69.0% |
| 1kyfA01 | 2.60.40.1230 | Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain | 0.54 | 46.0 | 3.62e-01 | 100.0% | 60.4% |
| 3kxtA00 | 2.30.30.610 | Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 | 0.54 | 39.0 | 4.00e-01 | 98.3% | 87.5% |
| 4d4rB01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.54 | 38.0 | 3.39e-01 | 82.8% | 50.0% |
| 2d4rA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.53 | 43.0 | 3.41e-01 | 100.0% | 82.9% |
| 4s1hA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.53 | 44.0 | 2.93e-01 | 100.0% | 84.3% |
| 2hboA01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.53 | 46.0 | 3.53e-01 | 98.3% | 74.4% |
| 3oyyA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 41.0 | 4.06e-01 | 100.0% | 83.3% |
| 5tgnA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 42.0 | 3.61e-01 | 100.0% | 76.1% |
| 3cebA01 | 3.30.470.10 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain | 0.52 | 39.0 | 3.53e-01 | 84.5% | 96.5% |
| 1sr4B00 | 3.60.10.10 | Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase | 0.51 | 42.0 | 2.82e-01 | 94.8% | 28.3% |
| 2jkgA00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.51 | 42.0 | 3.18e-01 | 100.0% | 61.2% |
| 6kd0A01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 42.0 | 2.68e-01 | 94.8% | 26.9% |
| 1l3aA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.51 | 41.0 | 3.16e-01 | 100.0% | 69.3% |
| 5c7qB00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.51 | 39.0 | 2.90e-01 | 91.4% | 46.1% |
ECOD (85)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4014375 | 3256.1.1.0 ↗ | a+b two layers › DUF2233 N-terminal domain › DUF2233 N-terminal domain › DUF2233 N-terminal domain | 0.76 | 56.0 | 5.90e-01 | 98.3% | 92.0% |
| 295937 | 2008.1.1.54 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › R-HINP1I | 0.76 | 54.0 | 3.50e-01 | 100.0% | 17.8% |
| 3725104 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.73 | 61.0 | 3.50e-01 | 100.0% | 10.4% |
| 4076295 | 375.1.1.88 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ogr_Delta | 0.73 | 51.0 | 5.19e-01 | 98.3% | 78.2% |
| 3937921 | 5.1.3.170 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_IFT140_2nd | 0.71 | 49.0 | 3.01e-01 | 100.0% | 12.7% |
| 3199266 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.70 | 62.0 | 3.64e-01 | 100.0% | 12.7% |
| 4976921 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.69 | 59.0 | 3.65e-01 | 100.0% | 16.7% |
| 4025190 | 3256.1.1.0 ↗ | a+b two layers › DUF2233 N-terminal domain › DUF2233 N-terminal domain › DUF2233 N-terminal domain | 0.68 | 52.0 | 5.39e-01 | 100.0% | 89.1% |
| 3737071 | 375.1.1.7 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C | 0.68 | 48.0 | 4.86e-01 | 98.3% | 74.6% |
| 5028736 | 316.1.1.41 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DUF6036 | 0.68 | 49.0 | 3.30e-01 | 100.0% | 20.0% |
| 4568161 | 283.2.1.18 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › Lipoprotein_17 | 0.67 | 49.0 | 4.46e-01 | 100.0% | 57.5% |
| 3783436 | 3270.1.1.1 ↗ | a+b two layers › a+b domain in heme oxygenase › a+b domain in heme oxygenase › a+b domain in heme oxygenase › DUF2470 | 0.65 | 53.0 | 4.44e-01 | 100.0% | 51.4% |
| 3439912 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.65 | 43.0 | 3.60e-01 | 70.7% | 39.0% |
| 4201878 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.64 | 51.0 | 4.97e-01 | 100.0% | 78.5% |
| 3679619 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.64 | 44.0 | 3.41e-01 | 100.0% | 31.3% |
| 4038269 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.64 | 50.0 | 4.90e-01 | 100.0% | 78.5% |
| 3599172 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 51.0 | 4.94e-01 | 100.0% | 78.5% |
| 4180235 | 243.3.1.5 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › FTP | 0.64 | 55.0 | 4.97e-01 | 100.0% | 71.2% |
| 4051625 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.63 | 50.0 | 4.86e-01 | 100.0% | 78.5% |
| 3263635 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.63 | 46.0 | 4.46e-01 | 98.3% | 70.8% |
| 3731604 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.63 | 46.0 | 2.94e-01 | 79.3% | 75.7% |
| 5036065 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.63 | 55.0 | 5.11e-01 | 100.0% | 84.0% |
| 4842604 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.62 | 50.0 | 4.35e-01 | 94.8% | 59.4% |
| 4814369 | 3414.1.1.3 ↗ | beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein › Bact_surface_Ig-like | 0.61 | 50.0 | 4.54e-01 | 100.0% | 66.7% |
| 5035584 | 375.1.1.31 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 | 0.61 | 46.0 | 4.18e-01 | 100.0% | 60.0% |
| 4240105 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.61 | 50.0 | 4.12e-01 | 100.0% | 48.7% |
| 5006562 | 2008.1.1.178 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NA-iREase1 | 0.61 | 52.0 | 3.88e-01 | 100.0% | 55.5% |
| 4956007 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.60 | 49.0 | 4.14e-01 | 96.6% | 52.4% |
| 5060010 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.60 | 40.0 | 4.29e-01 | 96.6% | 91.1% |
| 4393122 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.60 | 52.0 | 4.11e-01 | 100.0% | 48.0% |
| 5013017 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.60 | 51.0 | 3.85e-01 | 100.0% | 55.5% |
| 4228218 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.60 | 48.0 | 3.76e-01 | 100.0% | 39.8% |
| 5004264 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.59 | 50.0 | 3.96e-01 | 100.0% | 45.5% |
| 3258452 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.59 | 46.0 | 3.72e-01 | 87.9% | 62.5% |
| 5066760 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.59 | 49.0 | 3.87e-01 | 100.0% | 44.4% |
| 4632710 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 34.0 | 3.77e-01 | 96.6% | 73.3% |
| 4040973 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.59 | 44.0 | 4.22e-01 | 100.0% | 70.0% |
| 3864513 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.59 | 50.0 | 4.00e-01 | 100.0% | 69.6% |
| 3280330 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.59 | 51.0 | 3.10e-01 | 100.0% | 17.1% |
| 3221229 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 41.0 | 4.37e-01 | 98.3% | 95.6% |
| 5041149 | 4.26.1.9 ↗ | beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › CPxCG_zf | 0.58 | 40.0 | 4.33e-01 | 98.3% | 95.6% |
| 5023892 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.58 | 50.0 | 3.94e-01 | 100.0% | 48.8% |
| 4269457 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.58 | 50.0 | 3.89e-01 | 100.0% | 46.3% |
| 5038162 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.58 | 48.0 | 3.49e-01 | 96.6% | 49.7% |
| 4954798 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.58 | 50.0 | 3.98e-01 | 100.0% | 47.2% |
| 4940436 | 3414.1.1.0 ↗ | beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein | 0.58 | 47.0 | 4.16e-01 | 100.0% | 60.0% |
| 4609098 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.58 | 48.0 | 3.80e-01 | 100.0% | 42.2% |
| 3961321 | 223.3.1.2 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Peptidase_S11 | 0.58 | 40.0 | 3.33e-01 | 100.0% | 38.2% |
| 4976982 | 330.6.1.0 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain | 0.58 | 49.0 | 4.05e-01 | 100.0% | 51.8% |
| 4146937 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.58 | 49.0 | 4.74e-01 | 96.6% | 86.2% |
| 3288884 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 44.0 | 3.64e-01 | 84.5% | 46.7% |
| 3792117 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.57 | 42.0 | 4.08e-01 | 98.3% | 71.2% |
| 4391625 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.57 | 47.0 | 3.97e-01 | 100.0% | 52.7% |
| 3496242 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.57 | 42.0 | 4.49e-01 | 98.3% | 96.0% |
| 4049492 | 2003.1.2.16 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 | 0.57 | 49.0 | 2.93e-01 | 100.0% | 35.9% |
| 3334635 | 267.1.1.3 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase | 0.56 | 47.0 | 3.36e-01 | 94.8% | 38.9% |
| 3221233 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.56 | 37.0 | 3.93e-01 | 91.4% | 88.9% |
| 3888254 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 35.0 | 3.78e-01 | 96.6% | 80.0% |
| 4101580 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.56 | 41.0 | 4.07e-01 | 100.0% | 76.9% |
| 4304505 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.56 | 45.0 | 3.66e-01 | 100.0% | 43.8% |
| 3456692 | 386.1.1.4 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED | 0.56 | 37.0 | 3.73e-01 | 96.6% | 67.8% |
| 4104219 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.55 | 41.0 | 4.08e-01 | 100.0% | 78.5% |
| 3893883 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.55 | 38.0 | 2.47e-01 | 84.5% | 13.4% |
| 4618633 | 4.26.1.1 ↗ | beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › Cren7 | 0.55 | 41.0 | 4.11e-01 | 98.3% | 84.7% |
| 3520079 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.55 | 46.0 | 3.81e-01 | 100.0% | 70.4% |
| 3926535 | 2484.1.1.9 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve | 0.55 | 36.0 | 2.97e-01 | 72.4% | 32.0% |
| 3716903 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.55 | 46.0 | 2.92e-01 | 100.0% | 27.2% |
| 4967863 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.55 | 41.0 | 3.29e-01 | 100.0% | 39.2% |
| 3403106 | 331.3.1.5 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc | 0.54 | 41.0 | 2.99e-01 | 82.8% | 39.4% |
| 3479746 | 2007.2.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II | 0.54 | 44.0 | 2.92e-01 | 100.0% | 31.5% |
| 4440839 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.54 | 37.0 | 2.45e-01 | 89.7% | 14.2% |
| 3265170 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.54 | 43.0 | 4.21e-01 | 100.0% | 84.6% |
| 3306779 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.53 | 42.0 | 4.12e-01 | 100.0% | 83.1% |
| 3608236 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.53 | 42.0 | 4.14e-01 | 100.0% | 83.1% |
| 4086925 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.53 | 42.0 | 4.14e-01 | 100.0% | 84.6% |
| 3497120 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.52 | 40.0 | 3.47e-01 | 100.0% | 52.6% |
| 3598556 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 37.0 | 3.14e-01 | 77.6% | 40.9% |
| 3801953 | 76.1.1.2 ↗ | beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Jacalin | 0.52 | 41.0 | 3.37e-01 | 89.7% | 85.2% |
| 3176281 | 896.1.1.3 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP9-21 | 0.52 | 40.0 | 3.78e-01 | 89.7% | 73.3% |
| 4949036 | 375.1.1.21 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 | 0.51 | 37.0 | 3.86e-01 | 100.0% | 96.0% |
| 5029226 | 375.1.1.21 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 | 0.50 | 37.0 | 3.78e-01 | 98.3% | 89.1% |
| 4997648 | 375.1.1.21 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 | 0.50 | 34.0 | 3.59e-01 | 84.5% | 86.0% |
| 3993916 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.50 | 41.0 | 3.48e-01 | 100.0% | 51.8% |
| 4862964 | 3675.1.1.1 ↗ | a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › GyrB_insert | 0.50 | 37.0 | 2.78e-01 | 87.9% | 46.0% |
| 3205488 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.50 | 37.0 | 2.61e-01 | 86.2% | 21.7% |
D2
high
residues 69-140
Domain cluster:
rep: LC765218.1__BEG72394.1__RVBP21_0220__00022__D70-140
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5gaeH01 | 3.10.430.100 | Alpha Beta › Roll › Ribosomal Protein L9; domain 2 › Ribosomal protein L9, C-terminal domain | 0.63 | 54.0 | 5.32e-01 | 100.0% | 94.9% |
| 1vs9G02 | 3.10.430.100 | Alpha Beta › Roll › Ribosomal Protein L9; domain 2 › Ribosomal protein L9, C-terminal domain | 0.62 | 52.0 | 4.97e-01 | 100.0% | 84.3% |
| 3h3gA03 | 4.10.1240.10 | Few Secondary Structures › Irregular › Hormone receptor fold › GPCR, family 2, extracellular hormone receptor domain | 0.59 | 36.0 | 3.27e-01 | 81.9% | 42.0% |
| 4fajA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.54 | 46.0 | 3.63e-01 | 100.0% | 55.4% |
| 5kztA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.54 | 46.0 | 3.62e-01 | 100.0% | 54.2% |
| 1uqwA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.52 | 33.0 | 2.94e-01 | 100.0% | 41.1% |
| 2grvA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.52 | 44.0 | 3.42e-01 | 100.0% | 53.4% |
| 4wedA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.51 | 44.0 | 3.07e-01 | 100.0% | 70.8% |
| 4oevA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.51 | 44.0 | 3.52e-01 | 100.0% | 48.4% |
| 2o3oA02 | 3.30.310.160 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › YycH protein, domain 2 | 0.51 | 42.0 | 3.69e-01 | 100.0% | 86.7% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4412850 | 523.1.1.1 ↗ | a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal_L9_C | 0.67 | 58.0 | 5.34e-01 | 100.0% | 83.2% |
| 4416594 | 523.1.1.1 ↗ | a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal_L9_C | 0.66 | 57.0 | 5.15e-01 | 100.0% | 73.1% |
| 4056659 | 523.1.1.1 ↗ | a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal_L9_C | 0.66 | 57.0 | 5.34e-01 | 100.0% | 81.7% |
| 3835163 | 523.1.1.1 ↗ | a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal_L9_C | 0.66 | 56.0 | 5.03e-01 | 97.2% | 89.5% |
| 4063873 | 523.1.1.1 ↗ | a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal_L9_C | 0.66 | 56.0 | 5.33e-01 | 100.0% | 83.3% |
| 4164020 | 523.1.1.1 ↗ | a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal_L9_C | 0.65 | 57.0 | 5.27e-01 | 100.0% | 81.7% |
| 3838155 | 523.1.1.1 ↗ | a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal_L9_C | 0.65 | 56.0 | 5.19e-01 | 100.0% | 81.9% |
| 4423587 | 523.1.1.1 ↗ | a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal_L9_C | 0.65 | 56.0 | 5.29e-01 | 100.0% | 84.4% |
| 4361186 | 523.1.1.1 ↗ | a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal_L9_C | 0.65 | 56.0 | 5.25e-01 | 100.0% | 84.4% |
| 4512803 | 523.1.1.1 ↗ | a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal_L9_C | 0.65 | 55.0 | 5.21e-01 | 100.0% | 84.4% |
| 4323814 | 523.1.1.1 ↗ | a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal_L9_C | 0.65 | 55.0 | 5.15e-01 | 100.0% | 80.9% |
| 4191933 | 523.1.1.1 ↗ | a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal_L9_C | 0.65 | 56.0 | 5.00e-01 | 100.0% | 75.2% |
| 4111599 | 523.1.1.1 ↗ | a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal_L9_C | 0.64 | 55.0 | 5.21e-01 | 100.0% | 83.3% |
| 3316533 | 523.1.1.0 ↗ | a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain | 0.64 | 56.0 | 4.98e-01 | 100.0% | 89.5% |
| 4261318 | 523.1.1.1 ↗ | a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal_L9_C | 0.64 | 55.0 | 5.08e-01 | 100.0% | 81.6% |
| 4106528 | 523.1.1.1 ↗ | a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal_L9_C | 0.64 | 55.0 | 5.20e-01 | 100.0% | 83.3% |
| 4164295 | 523.1.1.1 ↗ | a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal_L9_C | 0.64 | 54.0 | 4.98e-01 | 100.0% | 75.0% |
| 4626545 | 523.1.1.1 ↗ | a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal_L9_C | 0.64 | 54.0 | 5.09e-01 | 100.0% | 80.6% |
| 4062074 | 523.1.1.1 ↗ | a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal_L9_C | 0.64 | 55.0 | 5.10e-01 | 100.0% | 81.7% |
| 4677068 | 523.1.1.1 ↗ | a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal_L9_C | 0.64 | 54.0 | 4.98e-01 | 100.0% | 75.0% |
| 4176193 | 523.1.1.1 ↗ | a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal_L9_C | 0.63 | 54.0 | 5.11e-01 | 100.0% | 83.3% |
| 3255807 | 523.1.1.0 ↗ | a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain | 0.63 | 54.0 | 5.11e-01 | 100.0% | 85.6% |
| 4227360 | 523.1.1.1 ↗ | a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal_L9_C | 0.63 | 54.0 | 5.05e-01 | 100.0% | 80.9% |
| 4678499 | 523.1.1.1 ↗ | a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal_L9_C | 0.63 | 54.0 | 5.10e-01 | 100.0% | 83.3% |
| 4432460 | 523.1.1.1 ↗ | a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal_L9_C | 0.63 | 54.0 | 5.10e-01 | 100.0% | 84.4% |
| 4089525 | 523.1.1.1 ↗ | a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal_L9_C | 0.63 | 54.0 | 5.10e-01 | 100.0% | 84.4% |
| 4588021 | 523.1.1.1 ↗ | a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal_L9_C | 0.63 | 54.0 | 4.85e-01 | 100.0% | 74.3% |
| 4286160 | 523.1.1.1 ↗ | a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal_L9_C | 0.63 | 54.0 | 5.08e-01 | 100.0% | 84.4% |
| 4583863 | 523.1.1.1 ↗ | a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal_L9_C | 0.62 | 53.0 | 4.87e-01 | 100.0% | 79.6% |
| 4524748 | 523.1.1.1 ↗ | a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal_L9_C | 0.62 | 53.0 | 4.78e-01 | 100.0% | 72.4% |
| 4126405 | 523.1.1.1 ↗ | a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal_L9_C | 0.62 | 53.0 | 4.82e-01 | 100.0% | 76.0% |
| 3634889 | 136.1.1.3 ↗ | alpha complex topology › Heme-dependent peroxidases › Heme-dependent peroxidases › Heme-dependent peroxidases › An_peroxidase | 0.51 | 40.0 | 2.44e-01 | 93.1% | 79.5% |
| 3637238 | 719.2.1.1 ↗ | beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N | 0.50 | 38.0 | 3.46e-01 | 83.3% | 82.0% |