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MF063068.1__ARV77370.1__NOXIFER_201__00201

Bact-Vir

MF063068.1__ARV77370.1__NOXIFER_201__00201

Identity

Accession:
MF063068 ↗
Kingdom:
phage

Quality

66.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Noxifervirus› Pseudomonas_phage_Noxifer

TaxID: 2006684

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 21-72
PDB
D2 high residues 94-132
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4d7kA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 50.0 3.86e-01 94.9% 35.4%
6opmD01 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.64 49.0 3.13e-01 100.0% 34.5%
1sseB00 1.10.238.100 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › YAP1 redox domain. Chain B 0.61 44.0 3.63e-01 94.9% 39.5%
5tj3A02 3.30.1360.150 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.59 40.0 3.00e-01 87.2% 25.2%
3k59A05 6.10.140.1130 Special › Helix non-globular › Helix Hairpins › 0.59 29.0 3.10e-01 82.1% 48.5%
1t98A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 40.0 3.05e-01 71.8% 34.5%
3py8A04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.58 39.0 2.79e-01 74.4% 44.4%
5gxuB01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 46.0 3.37e-01 97.4% 63.9%
3sigA00 3.40.220.10 Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 0.57 46.0 2.84e-01 97.4% 58.9%
2fxaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 46.0 3.23e-01 100.0% 59.0%
2zhgA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.57 41.0 3.06e-01 92.3% 28.1%
2fpqA00 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.57 44.0 2.61e-01 100.0% 71.5%
7pbkB02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.56 39.0 2.74e-01 74.4% 43.7%
3zqcA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.56 39.0 3.51e-01 87.2% 48.4%
2vx7A00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.56 39.0 2.34e-01 97.4% 8.7%
4yifF00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 45.0 3.28e-01 100.0% 67.7%
7pzaA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 43.0 3.40e-01 92.3% 40.7%
3c7jA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 41.0 3.38e-01 100.0% 40.7%
2qwwC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 44.0 3.18e-01 100.0% 59.4%
8d3mA02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.55 42.0 2.73e-01 100.0% 49.6%
1gu2A00 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.55 39.0 2.85e-01 79.5% 75.8%
3cdhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 43.0 3.16e-01 100.0% 70.1%
2l2oA00 1.10.10.1540 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Costar domain 0.54 41.0 3.47e-01 100.0% 45.9%
1sqwA01 3.10.450.220 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 41.0 3.33e-01 94.9% 67.7%
2e1mA05 1.10.405.10 Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › Guanine Nucleotide Dissociation Inhibitor, domain 1 0.53 37.0 2.97e-01 94.9% 33.0%
1zs7A01 3.10.450.120 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 0.52 41.0 3.20e-01 94.9% 45.2%
4q48A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 41.0 2.82e-01 100.0% 23.8%
1ae2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 33.0 2.68e-01 74.4% 26.7%
1t3aA00 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.51 44.0 2.54e-01 100.0% 21.3%
6ks6A02 3.30.260.10 Alpha Beta › 2-Layer Sandwich › GROEL; domain 2 › TCP-1-like chaperonin intermediate domain 0.51 39.0 3.04e-01 100.0% 90.7%
4b6lA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.51 39.0 2.71e-01 100.0% 93.1%
4o5vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 39.0 3.31e-01 92.3% 49.3%
5zyrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 38.0 2.75e-01 92.3% 53.6%
1bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 35.0 2.91e-01 87.2% 88.4%
3gpvA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.50 35.0 2.85e-01 100.0% 31.9%
2v7fA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 40.0 2.84e-01 94.9% 27.3%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3183367 109.4.1.356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.64 52.0 3.18e-01 97.4% 28.9%
4057677 3001.1.1.1 ↗ alpha arrays › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › THDPS_N_2 0.63 43.0 3.51e-01 74.4% 40.0%
3402781 3704.1.1.0 ↗ alpha superhelices › Apoptotic protease-activating factor 1 (Apaf-1) helical domain › Apoptotic protease-activating factor 1 (Apaf-1) helical domain › Apoptotic protease-activating factor 1 (Apaf-1) helical domain 0.63 43.0 2.92e-01 76.9% 17.7%
4083434 5069.1.1.53 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › UPF0182 0.61 47.0 3.11e-01 92.3% 18.9%
5049506 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 47.0 3.60e-01 94.9% 36.0%
3704475 101.1.2.19 ↗ alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac 0.61 47.0 3.09e-01 100.0% 34.0%
4939027 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.59 40.0 2.89e-01 76.9% 23.3%
3587769 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.59 45.0 2.72e-01 89.7% 15.2%
3209046 109.4.1.559 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Tuberin 0.58 42.0 2.64e-01 89.7% 12.1%
3993152 109.4.1.499 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › INTS5_C 0.58 42.0 2.64e-01 100.0% 11.4%
3655694 4992.1.1.0 ↗ extended segments › RelB-like › RelB-like › RelB-like 0.57 40.0 3.36e-01 87.2% 38.8%
3903618 219.1.1.54 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C98 0.56 42.0 2.66e-01 100.0% 24.5%
1721528 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 44.0 3.22e-01 94.9% 73.6%
4987454 101.1.2.927 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.56 41.0 3.28e-01 84.6% 84.4%
4961252 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 43.0 3.40e-01 89.7% 83.1%
3804069 101.1.2.396 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.55 43.0 3.40e-01 92.3% 74.7%
3362615 101.1.2.396 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.55 44.0 3.02e-01 89.7% 45.3%
4976469 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.55 42.0 2.62e-01 100.0% 14.2%
3959369 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 38.0 2.96e-01 84.6% 50.4%
4586962 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.54 42.0 3.17e-01 97.4% 73.3%
3788382 101.1.15.0 ↗ alpha arrays › HTH › HTH › HAT1, C-terminal domain 0.54 44.0 3.56e-01 94.9% 47.5%
3974773 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 42.0 3.23e-01 97.4% 83.8%
3320650 101.1.2.396 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.54 39.0 3.05e-01 100.0% 33.0%
4365970 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.54 40.0 3.10e-01 100.0% 32.7%
5051450 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.53 38.0 2.61e-01 92.3% 19.0%
4931685 101.1.2.21 ↗ alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.53 40.0 2.77e-01 84.6% 25.0%
3612318 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 37.0 2.31e-01 87.2% 10.1%
3837892 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 41.0 2.46e-01 89.7% 20.6%
4957076 101.1.9.134 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF2067 0.53 41.0 3.77e-01 100.0% 100.0%
3622196 604.1.1.63 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_SESTD1 0.53 38.0 2.88e-01 87.2% 30.8%
3876302 101.1.2.206 ↗ alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH 0.53 38.0 2.88e-01 79.5% 31.4%
3357775 101.1.2.396 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.52 40.0 3.21e-01 89.7% 83.3%
3824428 101.1.2.396 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.52 42.0 3.05e-01 97.4% 54.6%
4992861 101.1.2.927 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.52 42.0 3.22e-01 94.9% 37.9%
5051539 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.52 41.0 3.04e-01 94.9% 31.3%
4987460 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.52 39.0 3.33e-01 94.9% 61.3%
5077394 101.1.2.927 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.52 42.0 3.07e-01 94.9% 31.3%
3470561 109.4.1.80 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RRN3 0.52 38.0 2.21e-01 100.0% 12.4%
3307139 101.1.2.396 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.52 38.0 2.91e-01 97.4% 59.2%
4970959 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 39.0 3.48e-01 100.0% 60.0%
3675610 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.51 39.0 3.09e-01 97.4% 79.0%
3384077 101.1.2.396 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.51 40.0 3.31e-01 97.4% 83.3%
3315228 109.4.1.361 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NPH3 0.51 40.0 2.66e-01 100.0% 54.0%
4952217 101.1.2.652 ↗ alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C 0.51 39.0 2.70e-01 84.6% 25.9%
3885052 145.1.1.4 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › ASXH 0.51 35.0 2.87e-01 82.1% 30.5%
5034431 101.1.2.21 ↗ alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.51 39.0 2.67e-01 84.6% 25.0%
360918 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.51 41.0 3.06e-01 100.0% 59.8%
4965087 101.1.2.909 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF5797 0.51 36.0 3.10e-01 79.5% 92.9%
4962131 101.1.2.934 ↗ alpha arrays › HTH › HTH › winged helix domain › HVO_A0261_N 0.51 41.0 3.19e-01 94.9% 40.0%
5070087 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.51 36.0 3.12e-01 94.9% 44.7%
3358714 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 38.0 2.24e-01 97.4% 18.1%
4965164 101.1.2.392 ↗ alpha arrays › HTH › HTH › winged helix domain › SNRNP200_wHTH 0.51 39.0 3.19e-01 100.0% 91.6%
4945461 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 41.0 3.19e-01 94.9% 40.0%
5071107 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 38.0 2.84e-01 94.9% 30.8%
4195219 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.50 37.0 3.07e-01 100.0% 41.0%
3786841 101.1.2.392 ↗ alpha arrays › HTH › HTH › winged helix domain › SNRNP200_wHTH 0.50 42.0 3.18e-01 100.0% 40.0%
4948782 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.50 39.0 3.29e-01 94.9% 48.0%
3829974 101.1.2.396 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.50 38.0 3.25e-01 97.4% 83.7%
None — 0.50 37.0 2.59e-01 84.6% 24.1%
3953573 183.1.1.0 ↗ alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain 0.50 37.0 2.59e-01 84.6% 24.1%
D3 high residues 145-205
PDB
Domain cluster: rep: LC765218.1__BEG72465.1__RVBP21_0930__00093__D54-138
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gvzA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.68 56.0 3.70e-01 91.8% 89.8%
3hduA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.68 52.0 3.85e-01 82.0% 65.1%
1ykdB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.66 49.0 3.50e-01 86.9% 26.2%
4hgzA02 2.20.25.570 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.64 43.0 4.34e-01 75.4% 70.0%
2x5gA00 3.30.720.60 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.64 50.0 4.41e-01 86.9% 70.3%
3g7pA00 1.10.3100.20 Mainly Alpha › Orthogonal Bundle › Putative cytoplasmic protein › Protein of unknown function DUF269 0.63 44.0 3.41e-01 77.0% 31.7%
3rqbA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.63 45.0 2.98e-01 77.0% 54.5%
2pimA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.63 47.0 3.65e-01 80.3% 65.9%
6upsA01 3.40.395.10 Alpha Beta › 3-Layer(aba) Sandwich › Adenoviral Proteinase; Chain › Adenoviral Proteinase; Chain A 0.62 50.0 3.83e-01 91.8% 37.4%
2r41A00 3.10.450.150 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein 0.62 50.0 4.35e-01 93.4% 81.6%
2z4hA01 2.40.128.300 Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain 0.62 44.0 4.00e-01 78.7% 57.0%
1mhmA00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.62 45.0 2.97e-01 77.0% 28.1%
4aqzA00 2.60.40.3470 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 45.0 3.45e-01 77.0% 76.8%
3nwzB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.62 46.0 3.54e-01 82.0% 56.3%
3akoC00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.62 52.0 3.97e-01 96.7% 48.3%
4mxtA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.59 44.0 3.23e-01 100.0% 27.3%
3lhnA00 2.40.128.640 Mainly Beta › Beta Barrel › Lipocalin › 0.59 42.0 3.44e-01 85.2% 42.1%
4fpwB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 40.0 2.99e-01 100.0% 27.3%
1ylxA00 3.30.70.1480 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like 0.58 41.0 3.53e-01 78.7% 46.5%
6x6aA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.58 50.0 3.25e-01 98.4% 43.4%
1c8uA02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.58 42.0 3.56e-01 82.0% 68.7%
3qh4A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 49.0 3.17e-01 100.0% 31.8%
1i72A00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.57 50.0 3.34e-01 100.0% 66.1%
2nujA01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.57 43.0 3.34e-01 83.6% 63.5%
5yjwA00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.56 51.0 3.01e-01 100.0% 57.9%
3gm8A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 42.0 3.56e-01 96.7% 47.6%
1tluA00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.56 42.0 3.42e-01 82.0% 50.4%
2lmeA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.56 48.0 4.08e-01 100.0% 58.1%
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 45.0 4.21e-01 91.8% 72.4%
3a1jB00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.55 44.0 2.87e-01 86.9% 34.6%
3g8yA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 48.0 2.97e-01 100.0% 18.4%
1bp1A01 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.54 47.0 3.39e-01 98.4% 58.3%
3l4gC04 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.54 38.0 2.51e-01 75.4% 55.1%
3kztA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 45.0 3.60e-01 100.0% 84.8%
1oh1A00 2.40.310.10 Mainly Beta › Beta Barrel › Staphostatins › beta-Barrel protease inhibitors 0.53 37.0 3.15e-01 86.9% 42.2%
3f1jA00 2.70.20.40 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Borna disease virus, matrix protein 0.53 43.0 3.27e-01 88.5% 72.1%
4xrtA01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 39.0 2.98e-01 78.7% 35.2%
2l73A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 37.0 2.82e-01 73.8% 54.5%
4k35A02 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.53 43.0 3.04e-01 93.4% 31.9%
3qszA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 43.0 3.09e-01 86.9% 82.5%
2wanA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 43.0 3.69e-01 93.4% 84.5%
4i8oA02 3.30.160.690 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Bacterial toxin RNase RnlA/LsoA, N repeated domain 0.52 42.0 3.73e-01 88.5% 61.1%
2ewvA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 43.0 3.70e-01 95.1% 97.1%
2aehA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 41.0 3.36e-01 95.1% 46.8%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.52 40.0 3.78e-01 90.2% 70.4%
2wqlA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 40.0 3.01e-01 85.2% 35.5%
1nycA00 2.40.310.10 Mainly Beta › Beta Barrel › Staphostatins › beta-Barrel protease inhibitors 0.51 35.0 3.00e-01 88.5% 40.5%
5fl3A01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.51 43.0 3.73e-01 98.4% 96.0%
3jvvA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.51 42.0 3.63e-01 95.1% 97.0%
3nuhB03 3.10.20.690 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.51 41.0 3.74e-01 98.4% 79.8%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3510139 223.1.1.3 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.80 65.0 4.44e-01 86.9% 28.2%
3314304 3887.2.1.1 ↗ a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung 0.75 67.0 5.57e-01 100.0% 87.6%
3575222 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.71 60.0 6.08e-01 95.1% 100.0%
3619404 206.1.1.10 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Choline_kinase 0.70 45.0 2.79e-01 93.4% 11.9%
5065641 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.68 55.0 4.20e-01 95.1% 37.3%
4001272 3561.1.1.0 ↗ a+b complex topology › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 0.68 48.0 2.85e-01 75.4% 9.7%
3487827 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.68 44.0 2.68e-01 98.4% 10.2%
4976200 5104.1.1.1 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.67 55.0 4.40e-01 91.8% 60.0%
3340657 3887.2.1.1 ↗ a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung 0.66 56.0 4.77e-01 98.4% 86.7%
4804719 219.1.1.68 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › RickCE_cat 0.66 48.0 3.72e-01 78.7% 33.8%
3814980 206.1.1.10 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Choline_kinase 0.66 43.0 2.63e-01 93.4% 11.0%
4352332 3283.1.1.1 ↗ a+b two layers › Nitrogen fixation protein › Nitrogen fixation protein › Nitrogen fixation protein › DUF269 0.66 46.0 3.54e-01 75.4% 32.1%
5076776 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 52.0 4.70e-01 88.5% 73.8%
5051049 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 53.0 4.29e-01 100.0% 46.4%
5053230 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 53.0 4.39e-01 100.0% 53.3%
1718752 372.1.1.0 ↗ a+b complex topology › RNase A-like › RNase A-like › RNase A-like 0.63 51.0 4.30e-01 95.1% 69.3%
5030332 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.62 47.0 3.40e-01 82.0% 37.4%
4942959 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.61 43.0 2.97e-01 75.4% 30.9%
5053281 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 51.0 4.08e-01 95.1% 48.0%
5082399 316.1.1.18 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › AbiEii 0.61 46.0 3.39e-01 85.2% 90.6%
4433785 283.2.1.4 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GP46 0.61 50.0 4.08e-01 100.0% 90.8%
4994238 316.1.1.18 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › AbiEii 0.60 48.0 2.97e-01 86.9% 29.8%
3295575 284.1.3.2 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › OSR1_C 0.60 44.0 3.64e-01 85.2% 46.0%
3239992 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.60 45.0 3.17e-01 80.3% 27.6%
5048521 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 49.0 4.40e-01 95.1% 65.9%
4929306 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.58 47.0 2.93e-01 91.8% 52.6%
6647 241.8.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › GK1464-like › GK1464-like › DUF5634 0.58 41.0 3.52e-01 77.0% 46.0%
3782284 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 47.0 3.41e-01 100.0% 33.8%
3377134 225.1.1.0 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.57 45.0 3.53e-01 91.8% 40.0%
3600523 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.57 49.0 3.05e-01 100.0% 44.7%
4819450 110.1.1.5 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › CENP-N 0.57 38.0 2.97e-01 70.5% 49.6%
3808882 4051.1.1.1 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.57 50.0 3.53e-01 95.1% 43.4%
3561488 206.1.1.10 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Choline_kinase 0.57 48.0 3.00e-01 96.7% 49.6%
3526787 213.1.1.6 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › ODC_AZ 0.55 40.0 3.22e-01 78.7% 56.9%
177347 7579.1.1.45 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_7 0.55 48.0 2.98e-01 100.0% 18.6%
4928889 3281.1.1.1 ↗ alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M 0.55 46.0 2.77e-01 98.4% 95.0%
3192363 206.1.1.11 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.55 46.0 2.89e-01 98.4% 38.3%
2627446 873.1.1.5 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB 0.55 46.0 3.38e-01 100.0% 53.2%
3586687 206.1.1.10 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Choline_kinase 0.55 41.0 2.83e-01 80.3% 52.9%
3787121 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.55 42.0 3.34e-01 83.6% 48.0%
4985600 896.1.1.0 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.54 44.0 4.09e-01 91.8% 92.5%
3591940 223.2.1.19 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_1 0.54 45.0 3.29e-01 100.0% 57.9%
867 9.6.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Staphostatin › Staphostatin › Staphostatin_A 0.53 37.0 3.15e-01 86.9% 42.2%
2755883 331.19.1.1 ↗ a+b two layers › TBP-like › Toxin RnlA N-terminal domains › Toxin RnlA N-terminal domains › RnlA_toxin 0.53 43.0 3.74e-01 88.5% 59.8%
4243918 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.53 46.0 3.43e-01 98.4% 46.5%
5027412 3241.1.1.0 ↗ alpha arrays › Golgi phosphoprotein 3 › Golgi phosphoprotein 3 › Golgi phosphoprotein 3 0.52 47.0 3.22e-01 100.0% 84.2%
3970663 7579.1.1.0 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.52 45.0 2.95e-01 100.0% 23.4%
3707978 5.1.1.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed 0.52 37.0 2.66e-01 77.0% 56.9%
3246551 3561.1.1.0 ↗ a+b complex topology › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 0.52 46.0 2.76e-01 96.7% 18.0%
5014183 310.3.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.51 44.0 3.93e-01 100.0% 100.0%
868 9.6.1.2 ↗ beta barrels › Lipocalins/Streptavidin › Staphostatin › Staphostatin › Staphostatin_B 0.51 35.0 3.00e-01 88.5% 40.5%
4946507 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.51 41.0 3.85e-01 96.7% 72.0%
3549045 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.51 38.0 3.29e-01 100.0% 48.2%