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MF063068.1__ARV77401.1__NOXIFER_236__00232
Bact-VirMF063068.1__ARV77401.1__NOXIFER_236__00232
Identity
- Accession:
- MF063068 ↗
- Kingdom:
- phage
Quality
70.4
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Chimalliviridae›
Noxifervirus›
Pseudomonas_phage_Noxifer
TaxID: 2006684
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 17-141
Domain cluster:
rep: OL955261.1__UIS25286.1__X__00086__D10-77_186-240
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7q5yB01 | 3.30.460.80 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit | 0.74 | 47.0 | 4.85e-01 | 79.2% | 67.5% |
| 7z7vC01 | 3.30.460.80 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit | 0.73 | 51.0 | 5.10e-01 | 79.2% | 70.1% |
| 7z0sE01 | 3.30.460.80 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit | 0.71 | 47.0 | 4.82e-01 | 79.2% | 69.7% |
| 3mcrA00 | 3.30.460.80 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit | 0.70 | 47.0 | 4.39e-01 | 79.2% | 55.8% |
| 7arcC01 | 3.30.460.80 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit | 0.68 | 48.0 | 4.69e-01 | 80.0% | 66.7% |
| 3ulbA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.61 | 40.0 | 4.77e-01 | 76.8% | 100.0% |
| 6s8zA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 30.0 | 4.04e-01 | 90.4% | 98.4% |
| 3a5zB01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 30.0 | 4.01e-01 | 88.0% | 96.8% |
| 3tqmA00 | 3.30.160.100 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like | 0.57 | 32.0 | 3.75e-01 | 84.0% | 76.7% |
| 3oyyA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 29.0 | 3.71e-01 | 84.8% | 87.9% |
| 2r0cA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.52 | 37.0 | 2.90e-01 | 72.8% | 62.4% |
| 1sezA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 37.0 | 3.30e-01 | 76.0% | 59.4% |
| 2nvwA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.51 | 39.0 | 3.33e-01 | 81.6% | 89.8% |
| 3so6A00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 42.0 | 4.08e-01 | 90.4% | 83.2% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5025112 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.77 | 47.0 | 4.74e-01 | 79.2% | 60.8% |
| 5044076 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.74 | 46.0 | 4.77e-01 | 79.2% | 66.1% |
| 3261599 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.74 | 51.0 | 4.26e-01 | 79.2% | 43.1% |
| 4977528 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.73 | 47.0 | 4.58e-01 | 80.0% | 59.3% |
| 4176396 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.73 | 47.0 | 4.10e-01 | 79.2% | 43.8% |
| 4600928 | 4272.1.1.0 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like | 0.73 | 51.0 | 4.58e-01 | 79.2% | 52.9% |
| 4220776 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.72 | 50.0 | 4.34e-01 | 80.0% | 46.8% |
| 3998224 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.72 | 48.0 | 4.57e-01 | 79.2% | 57.9% |
| 4314610 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.72 | 53.0 | 4.59e-01 | 80.0% | 51.1% |
| 5047172 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.72 | 46.0 | 4.14e-01 | 79.2% | 47.6% |
| 4125128 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.72 | 47.0 | 4.35e-01 | 79.2% | 51.9% |
| 4201236 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.72 | 50.0 | 4.50e-01 | 80.0% | 52.4% |
| 4215842 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.72 | 51.0 | 4.37e-01 | 80.0% | 46.7% |
| 4680595 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.72 | 48.0 | 4.41e-01 | 79.2% | 54.2% |
| 3232194 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.72 | 48.0 | 3.92e-01 | 79.2% | 39.1% |
| 4048312 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.71 | 54.0 | 4.53e-01 | 79.2% | 50.0% |
| 2774534 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.71 | 47.0 | 3.86e-01 | 79.2% | 38.2% |
| 4407396 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.70 | 48.0 | 4.11e-01 | 79.2% | 45.7% |
| 3178803 | 896.1.1.3 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP9-21 | 0.65 | 43.0 | 5.10e-01 | 80.8% | 98.8% |
| 3088296 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.65 | 50.0 | 4.27e-01 | 80.0% | 53.0% |
| 3176281 | 896.1.1.3 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP9-21 | 0.62 | 37.0 | 4.54e-01 | 76.0% | 98.7% |
| 3723171 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.59 | 45.0 | 4.23e-01 | 79.2% | 90.0% |
| 3501631 | 896.1.1.2 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP14 | 0.57 | 44.0 | 4.85e-01 | 84.0% | 100.0% |
| 4135153 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.57 | 31.0 | 3.88e-01 | 84.8% | 88.0% |
| 4558929 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.53 | 30.0 | 3.58e-01 | 87.2% | 85.0% |
| 3803728 | 1.1.11.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › At2g31720-like | 0.52 | 39.0 | 3.69e-01 | 80.0% | 90.8% |
| 3923655 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 37.0 | 3.27e-01 | 75.2% | 85.9% |
D2
high
residues 151-232