←Back to structures

MF063068.1__ARV77466.1__NOXIFER_301__00297

Bact-Vir

MF063068.1__ARV77466.1__NOXIFER_301__00297

Identity

Accession:
MF063068 ↗
Kingdom:
phage

Quality

86.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Noxifervirus› Pseudomonas_phage_Noxifer

TaxID: 2006684

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 213-290
PDB
Domain cluster: rep: ON470598.1__URC09528.1__X__00052__D66-153
CATH (59)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4kbxA01 2.40.37.30 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › 0.70 63.0 4.48e-01 100.0% 41.9%
3qnfC01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.68 59.0 4.34e-01 100.0% 36.6%
2w5eA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.68 46.0 4.91e-01 76.9% 83.1%
3lnnA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.68 59.0 5.64e-01 98.7% 100.0%
3fppA01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.67 60.0 5.49e-01 100.0% 87.5%
4eclA01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.66 58.0 4.67e-01 97.4% 76.8%
1yloE02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.66 54.0 5.29e-01 91.0% 97.6%
6tdyD01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.65 55.0 5.65e-01 93.6% 97.3%
7ylrA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.65 55.0 5.04e-01 94.9% 100.0%
1qfjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.65 55.0 5.23e-01 93.6% 94.5%
4wqmA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.65 56.0 5.20e-01 97.4% 92.9%
3zn6A02 2.60.40.3410 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 56.0 5.46e-01 98.7% 100.0%
4j27A02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.63 51.0 4.97e-01 98.7% 78.7%
2piaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.63 53.0 4.90e-01 96.2% 92.3%
2n01B00 2.60.40.2500 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 50.0 4.58e-01 94.9% 65.1%
4wz9A01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.63 54.0 4.04e-01 100.0% 60.7%
2vbkA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.62 51.0 3.11e-01 100.0% 13.9%
4psrA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.62 54.0 4.73e-01 98.7% 68.9%
1mrzB02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.62 51.0 4.60e-01 94.9% 65.2%
1fx0B01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.62 53.0 5.29e-01 97.4% 96.2%
2dlgA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 50.0 5.03e-01 91.0% 86.3%
4fkeA01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.61 53.0 3.93e-01 100.0% 35.9%
3hrpA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 54.0 5.06e-01 100.0% 83.2%
2fsdA00 2.60.40.2460 Mainly Beta › Sandwich › Immunoglobulin-like › Phage bIL170 RBP, head domain 0.60 52.0 4.71e-01 100.0% 78.2%
2d7nA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 43.0 4.42e-01 87.2% 77.9%
1n26A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 52.0 4.77e-01 100.0% 82.2%
3fanA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 43.0 4.46e-01 89.7% 83.6%
4zciA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 49.0 4.60e-01 97.4% 89.1%
4fx5A01 2.60.40.3670 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 51.0 4.21e-01 100.0% 54.2%
4jx0A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 51.0 4.21e-01 100.0% 64.3%
1nc7A00 2.60.290.11 Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › TM1070-like 0.58 50.0 4.50e-01 100.0% 75.9%
7plsA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.58 49.0 4.63e-01 97.4% 79.6%
6grqA05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 49.0 4.58e-01 97.4% 83.8%
4a4aA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 49.0 4.19e-01 100.0% 96.3%
4kh9B02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.57 49.0 4.36e-01 97.4% 77.0%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.57 50.0 3.83e-01 100.0% 52.1%
5os9A00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.57 47.0 4.21e-01 94.9% 85.2%
6f2mA02 2.40.30.290 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.57 49.0 4.79e-01 98.7% 88.5%
2kd7A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 48.0 3.94e-01 100.0% 93.1%
1etb200 2.60.40.180 Mainly Beta › Sandwich › Immunoglobulin-like › Transthyretin/hydroxyisourate hydrolase domain 0.56 44.0 3.90e-01 87.2% 60.7%
1o7dC02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 47.0 4.58e-01 98.7% 83.1%
4n0rA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 44.0 4.34e-01 88.5% 82.4%
6grsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 45.0 4.29e-01 91.0% 83.2%
5h7jA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 47.0 4.26e-01 96.2% 75.9%
2rrfA00 2.30.29.160 Mainly Beta › Roll › PH-domain like › Zinc finger FYVE domain-containing protein 21, C-terminal 0.56 39.0 3.32e-01 75.6% 80.9%
4b7lA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 49.0 4.53e-01 100.0% 86.0%
4jzjC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 48.0 4.42e-01 100.0% 85.6%
2jdaB00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 47.0 3.95e-01 100.0% 60.6%
1yelA00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.55 46.0 4.27e-01 98.7% 82.4%
7kbrC01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 44.0 3.69e-01 88.5% 54.5%
2v72A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 46.0 3.95e-01 100.0% 68.6%
3nkgA00 2.60.120.790 Mainly Beta › Sandwich › Jelly Rolls › 0.53 44.0 3.62e-01 100.0% 97.6%
1k42A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 44.0 3.59e-01 100.0% 98.8%
7p0eA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 44.0 4.17e-01 98.7% 90.9%
4lr4A02 2.60.120.1430 Mainly Beta › Sandwich › Jelly Rolls › 0.52 44.0 3.55e-01 100.0% 66.1%
4ofyD03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 43.0 4.11e-01 97.4% 86.5%
3b8fB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.52 37.0 3.12e-01 78.2% 52.1%
2q2eB01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.51 44.0 3.25e-01 100.0% 47.1%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 35.0 3.47e-01 73.1% 72.3%
ECOD (92)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3268048 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 48.0 5.29e-01 82.1% 93.3%
4957575 1.16.1.0 ↗ beta barrels › cradle loop barrel › Baseplate wedge protein gp6 domain I › Baseplate wedge protein gp6 domain I 0.69 60.0 5.96e-01 100.0% 92.5%
5041917 1.1.7.8 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L35Ae 0.68 60.0 5.71e-01 97.4% 97.8%
4666540 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.68 57.0 5.61e-01 94.9% 100.0%
4948545 4081.1.1.5 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.68 57.0 4.27e-01 100.0% 37.9%
5023371 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.67 57.0 5.39e-01 94.9% 94.7%
4521518 1.1.7.121 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Phage_BR0599 0.67 58.0 5.17e-01 98.7% 67.0%
4883586 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 58.0 5.63e-01 96.2% 87.2%
4943543 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 57.0 4.89e-01 96.2% 79.2%
3392702 4081.1.1.5 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.66 59.0 4.30e-01 100.0% 37.7%
3974673 1.1.7.96 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FIST_C 0.66 56.0 5.37e-01 94.9% 97.8%
4238113 4081.1.1.5 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.66 54.0 3.96e-01 100.0% 34.1%
4955932 4081.1.1.0 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.65 58.0 4.36e-01 100.0% 41.0%
3512272 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.65 54.0 5.47e-01 96.2% 94.7%
4946447 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.65 58.0 5.53e-01 98.7% 88.9%
2556060 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.65 56.0 5.69e-01 97.4% 98.7%
2814163 4081.1.1.5 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.65 58.0 4.18e-01 100.0% 35.9%
4636885 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.65 55.0 5.58e-01 94.9% 97.3%
4518787 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.64 55.0 5.67e-01 98.7% 100.0%
4010630 2004.1.1.10 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP-synt_ab 0.64 55.0 3.45e-01 98.7% 17.4%
4475360 11.1.1.59 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CagX 0.64 47.0 4.05e-01 97.4% 47.7%
3642150 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.64 52.0 4.92e-01 92.3% 73.7%
4943366 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 55.0 5.43e-01 97.4% 91.8%
3617096 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.64 56.0 4.99e-01 100.0% 67.8%
4162532 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.64 52.0 5.35e-01 98.7% 96.0%
3512122 4081.1.1.5 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.64 55.0 4.19e-01 100.0% 40.5%
4660673 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.64 55.0 5.38e-01 97.4% 90.6%
3705413 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 54.0 5.08e-01 94.9% 94.7%
4072878 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.64 55.0 5.52e-01 97.4% 95.0%
4557647 11.1.1.59 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CagX 0.64 47.0 3.97e-01 96.2% 45.9%
3973332 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 53.0 5.46e-01 97.4% 98.7%
3520927 4081.1.1.5 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.63 56.0 4.09e-01 100.0% 36.8%
2161972 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 54.0 5.35e-01 96.2% 92.8%
4074297 1.1.7.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.63 55.0 4.90e-01 98.7% 71.3%
4928022 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 56.0 5.03e-01 100.0% 79.8%
3944437 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 54.0 5.40e-01 97.4% 96.2%
4197108 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 52.0 5.05e-01 98.7% 81.1%
1684089 11.1.1.59 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CagX 0.63 50.0 4.58e-01 94.9% 65.1%
3198544 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 53.0 4.74e-01 96.2% 92.2%
4366483 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.63 55.0 5.40e-01 100.0% 92.9%
3247984 11.21.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.62 50.0 5.00e-01 89.7% 100.0%
4854964 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.62 54.0 5.26e-01 98.7% 88.4%
4949296 12.5.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related 0.62 53.0 4.30e-01 96.2% 62.3%
4402716 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.62 51.0 5.06e-01 97.4% 85.9%
3242650 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 54.0 4.00e-01 100.0% 82.3%
4530320 11.1.5.89 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF3707 0.62 54.0 4.51e-01 98.7% 71.4%
3586645 11.1.1.12 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Filamin 0.62 51.0 4.68e-01 88.5% 71.0%
4026674 11.21.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.62 50.0 4.98e-01 96.2% 88.7%
5079674 11.21.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.62 50.0 5.16e-01 96.2% 96.0%
3511056 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.61 52.0 4.05e-01 100.0% 76.4%
127 1.1.7.10 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase 0.61 52.0 4.70e-01 96.2% 68.8%
4197746 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.61 51.0 4.97e-01 98.7% 85.9%
3180314 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 51.0 5.04e-01 96.2% 96.5%
3597282 11.21.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.61 49.0 4.94e-01 96.2% 90.0%
3877348 4178.1.1.0 ↗ beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain 0.60 51.0 4.19e-01 92.3% 55.8%
4992085 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.60 52.0 4.99e-01 97.4% 94.4%
4980867 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 52.0 4.75e-01 97.4% 81.9%
3618151 4178.1.1.1 ↗ beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › DUF5110 0.60 51.0 4.15e-01 93.6% 53.8%
3945528 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 51.0 5.14e-01 98.7% 96.2%
3712506 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 51.0 4.98e-01 97.4% 89.4%
3572172 4178.1.1.0 ↗ beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain 0.60 50.0 4.14e-01 92.3% 55.4%
4393143 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 48.0 5.00e-01 98.7% 100.0%
3877933 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 48.0 4.63e-01 88.5% 80.0%
4265804 11.1.5.89 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF3707 0.59 50.0 4.05e-01 98.7% 61.2%
3783233 4081.1.1.7 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Ribophorin_I 0.59 51.0 3.89e-01 100.0% 42.6%
4027080 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.58 45.0 3.78e-01 83.3% 79.3%
5068207 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 48.0 4.56e-01 91.0% 84.2%
3885267 4178.1.1.0 ↗ beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain 0.58 48.0 4.05e-01 92.3% 56.5%
3504760 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.58 44.0 4.24e-01 83.3% 80.0%
5032790 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 50.0 4.70e-01 100.0% 81.0%
3244566 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 47.0 4.74e-01 92.3% 87.5%
4360808 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.58 50.0 4.60e-01 97.4% 77.7%
4108039 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.57 43.0 4.26e-01 83.3% 82.4%
3922225 4178.1.1.0 ↗ beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain 0.57 47.0 3.97e-01 92.3% 55.6%
1558582 5092.1.1.6 ↗ beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › Fiber_head_BAdV-4 0.57 50.0 4.43e-01 100.0% 80.0%
5033012 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 47.0 4.51e-01 100.0% 88.4%
3596917 4178.1.1.0 ↗ beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain 0.55 47.0 3.92e-01 98.7% 77.2%
3254415 10.20.1.0 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in cysteine protease › Jelly-roll domain in cysteine protease 0.55 48.0 4.40e-01 100.0% 81.9%
3663362 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 46.0 3.78e-01 100.0% 73.8%
3707942 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 47.0 4.22e-01 100.0% 76.5%
3374694 10.32.1.253 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › SAC9_C 0.54 47.0 3.81e-01 100.0% 68.1%
5042117 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.53 46.0 4.02e-01 100.0% 64.8%
4468809 10.1.1.10 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.53 46.0 3.63e-01 100.0% 57.1%
3907540 10.32.1.188 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › TMEM181_GOLD 0.52 43.0 3.76e-01 94.9% 87.2%
3538225 10.32.1.216 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › MAM 0.52 45.0 3.61e-01 100.0% 60.0%
3875305 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.52 45.0 2.68e-01 100.0% 14.5%
3749225 10.1.1.10 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.52 45.0 3.59e-01 100.0% 60.0%
3910727 4.1.1.353 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_TNRC18 0.52 38.0 4.09e-01 94.9% 95.4%
3261761 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 44.0 4.19e-01 100.0% 83.2%
5033234 225.1.1.0 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.51 41.0 3.41e-01 89.7% 63.4%
5036092 225.1.1.0 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.51 44.0 3.26e-01 100.0% 46.6%
1762256 10.32.1.51 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_35 0.51 43.0 3.75e-01 100.0% 97.7%
D2 medium residues 68-144
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1f89A00 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.63 49.0 3.43e-01 87.0% 39.9%
5gj7A02 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.63 43.0 4.10e-01 72.7% 100.0%
2pbfA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.62 51.0 3.67e-01 89.6% 51.4%
3qwxX01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.62 47.0 4.18e-01 81.8% 75.0%
1wxrA03 3.30.160.280 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.62 44.0 4.45e-01 74.0% 76.3%
1wquA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.61 42.0 3.75e-01 77.9% 49.1%
3g7kA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.61 42.0 3.19e-01 71.4% 51.3%
2cr4A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.61 44.0 4.11e-01 77.9% 68.7%
8c5iA01 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.60 48.0 3.29e-01 90.9% 35.6%
1bf5A04 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.60 41.0 3.69e-01 72.7% 53.1%
6vbkA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.60 41.0 3.66e-01 71.4% 82.0%
1h9oA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.58 48.0 4.29e-01 90.9% 65.7%
1vbfA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 44.0 3.26e-01 85.7% 54.9%
1u14A00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.57 44.0 3.53e-01 87.0% 82.8%
3g98A00 3.10.310.40 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.55 42.0 3.79e-01 83.1% 82.9%
4perB00 3.10.130.10 Alpha Beta › Roll › P-30 Protein › Ribonuclease A-like domain 0.55 37.0 3.36e-01 70.1% 78.0%
1edzA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 44.0 3.57e-01 89.6% 48.7%
5t5sA01 3.10.310.40 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.55 43.0 3.70e-01 87.0% 71.3%
3ot2A00 3.90.1570.10 Alpha Beta › Alpha-Beta Complex › tt1808, chain A › tt1808, chain A 0.55 46.0 3.51e-01 97.4% 39.7%
7ykvB02 3.10.310.30 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.55 40.0 3.70e-01 77.9% 80.2%
3dasA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 45.0 2.95e-01 89.6% 46.1%
2ddmB00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.54 46.0 3.21e-01 97.4% 41.0%
2qm4A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.53 38.0 3.22e-01 77.9% 89.5%
2yj6A02 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.53 31.0 2.95e-01 75.3% 47.4%
4tl8F00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 41.0 3.06e-01 89.6% 49.3%
2kc8A00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.51 35.0 3.35e-01 72.7% 69.5%
7zp0A01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.50 38.0 3.12e-01 81.8% 87.0%
2anuA00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.50 39.0 2.93e-01 88.3% 54.9%
2qb7B02 3.10.310.20 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › DHHA2 domain 0.50 37.0 3.17e-01 81.8% 74.3%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3408495 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.66 58.0 4.38e-01 97.4% 61.6%
3922307 2007.1.2.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.64 55.0 4.16e-01 100.0% 53.0%
4943236 2488.1.1.0 ↗ a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot 0.64 50.0 3.74e-01 84.4% 61.6%
3385678 2003.1.5.4 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT 0.63 48.0 3.53e-01 80.5% 60.3%
4500970 2007.1.2.42 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › PF29770 0.63 51.0 3.87e-01 88.3% 40.5%
3517867 214.1.1.9 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7063 0.62 46.0 3.89e-01 79.2% 50.0%
3209621 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.62 55.0 4.06e-01 100.0% 41.0%
3995512 7504.1.1.0 ↗ a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like 0.61 49.0 3.60e-01 87.0% 88.0%
3412552 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.61 54.0 4.08e-01 100.0% 55.8%
5075341 2488.1.1.8 ↗ a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › Methyltrn_RNA_2 0.61 43.0 3.27e-01 75.3% 56.9%
None — 0.60 47.0 3.43e-01 84.4% 57.7%
4021911 7504.1.1.5 ↗ a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › DUF5427 0.60 46.0 3.55e-01 83.1% 84.6%
3837554 4126.1.1.1 ↗ a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › Pro_CA 0.59 48.0 3.51e-01 89.6% 61.9%
3200827 2008.1.1.143 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF7924 0.59 52.0 3.53e-01 100.0% 38.3%
3839191 246.1.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase 0.58 47.0 3.28e-01 90.9% 38.2%
4411782 5104.1.1.0 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.58 44.0 3.94e-01 81.8% 78.2%
4978781 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.57 45.0 3.56e-01 85.7% 46.3%
3878288 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.56 46.0 4.04e-01 90.9% 63.6%
3697978 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.56 43.0 3.35e-01 87.0% 37.9%
4027965 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.56 45.0 3.05e-01 90.9% 61.2%
3188169 246.1.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase 0.56 45.0 3.01e-01 92.2% 33.5%
4234478 5104.1.1.1 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.55 43.0 3.76e-01 83.1% 71.9%
4344652 7503.1.1.0 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain 0.55 43.0 3.75e-01 83.1% 80.9%
3420356 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.55 40.0 3.43e-01 79.2% 46.9%
4941979 5104.1.1.1 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.54 41.0 3.58e-01 83.1% 71.7%
4657303 244.1.1.5 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › FAD_binding_3 0.54 43.0 3.68e-01 88.3% 96.8%
3573532 2007.15.1.11 ↗ a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase › MAP3K_TRAF_bd 0.53 41.0 3.48e-01 85.7% 60.7%
4025734 2006.1.6.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.53 39.0 2.95e-01 84.4% 33.3%
3926153 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.52 41.0 3.25e-01 89.6% 42.7%
4162930 2002.1.1.102 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP 0.51 43.0 3.22e-01 94.8% 52.7%
3958242 885.1.1.0 ↗ a+b complex topology › Transcription factor NusA, N-terminal domain › Transcription factor NusA, N-terminal domain › Transcription factor NusA, N-terminal domain 0.51 34.0 3.21e-01 97.4% 54.0%
3196992 225.1.1.0 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.51 40.0 2.94e-01 87.0% 83.3%
3731818 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.51 43.0 2.78e-01 100.0% 38.6%
4960403 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.50 33.0 3.17e-01 83.1% 55.6%
4159894 2007.2.5.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase › Rhodanese 0.50 40.0 3.23e-01 89.6% 55.6%